RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 NT5DC1Q5TFE4 455 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 WWC2Q6AWC2 1192 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 USP17L2Q6R6M4 530 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 BTNL9Q6UXG8 535 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 PIK3AP1Q6ZUJ8 805 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 HEATR3Q7Z4Q2 680 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 REXO1Q8N1G1 1221 aaKnown RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 IQUBQ8NA54 791 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 RNF214Q8ND24 703 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 CUL5Q93034 780 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 PRMT6Q96LA8 375 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 RAB34Q9BZG1 259 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 TDRD3Q9H7E2 651 aaKnown RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ZNF277Q9NRM2 450 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 PCDHA6Q9UN73 950 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 PCDHB9Q9Y5E1 797 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 PCDHA8Q9Y5H6 950 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ATAD5Q96QE3 1844 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 MYH7BA7E2Y1 1941 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 UBE2Q2LH0YL09 131 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 GPR25O00155 361 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 RAD17O75943 681 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 FOSP01100 380 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-239ENST00000545694 ASNSP08243 561 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 EEF2P13639 858 aaKnown RBP7.01□□□□□ -1.29
SYNE1-239ENST00000545694 CDC25BP30305 580 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 SLC1A4P43007 532 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 RNF144AP50876 292 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-239ENST00000545694 CXCL9Q07325 125 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 TCP10Q12799 353 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 AP3B2Q13367 1082 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 IQCB1Q15051 598 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 SLFN13Q68D06 897 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 GPAT2Q6NUI2 795 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 MOXD1Q6UVY6 613 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 DTHD1Q6ZMT9 781 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 RIPOR1Q6ZS17 1223 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 NEK8Q86SG6 692 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 ZSCAN30Q86W11 494 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 MLKLQ8NB16 471 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 SHISA4Q96DD7 197 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 GSDMAQ96QA5 445 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 CCSER1Q9C0I3 900 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 PDGFDQ9GZP0 370 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-239ENST00000545694 DNAJC18Q9H819 358 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.01□□□□□ -1.29
SYNE1-239ENST00000545694 CBX8Q9HC52 389 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 GOPCQ9HD26 462 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 RIC8AQ9NPQ8 531 aa7.01□□□□□ -1.29
SYNE1-239ENST00000545694 A0A1W2PRU2 124 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 FZD9O00144 591 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 POLR2DO15514 142 aaKnown RBP7□□□□□ -1.29
SYNE1-239ENST00000545694 NEMFO60524 1076 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 ZBTB7AO95365 584 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 ADCY5O95622 1261 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 CELA2BP08218 269 aaPredicted RBP7□□□□□ -1.29
SYNE1-239ENST00000545694 GOLGA8HP0CJ92 632 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 BMP3P12645 472 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 USP11P51784 963 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 SRSF11Q05519 484 aaKnown RBP7□□□□□ -1.29
SYNE1-239ENST00000545694 PDIA5Q14554 519 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 POSTNQ15063 836 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 ZNF174Q15697 407 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 CCDC96Q2M329 555 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 TMEM266Q2M3C6 531 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 SLC35G1Q2M3R5 365 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 PPP4R3AQ6IN85 833 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 FAM160B2Q86V87 743 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 ZFPM1Q8IX07 1006 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 ADGRF4Q8IZF3 695 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 LRRC47Q8N1G4 583 aaKnown RBP7□□□□□ -1.29
SYNE1-239ENST00000545694 SAMD3Q8N6K7 520 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 C4orf32Q8N8J7 132 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 SPATA20Q8TB22 786 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 CHURC1Q8WUH1 139 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 SMARCE1Q969G3 411 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 MRFAP1L1Q96HT8 127 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 PIGSQ96S52 555 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 AMNQ9BXJ7 453 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 MAF1Q9H063 256 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 CSRNP2Q9H175 543 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 DNAJC25Q9H1X3 360 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 JMJD4Q9H9V9 463 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 MYOZ2Q9NPC6 264 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 RMND1Q9NWS8 449 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 TMX2Q9Y320 296 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 PPP2R3BQ9Y5P8 575 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 SBF1O95248 1867 aa7□□□□□ -1.29
SYNE1-239ENST00000545694 LOXHD1Q8IVV2 1947 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 hCG_1642624A0A1W2PR95 340 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 ZBBXA8MT70 800 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 F5H6K3 240 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 NFKBIEO00221 500 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 WNT10BO00744 389 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 CBFA2T2O43439 604 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 PTMAP06454 111 aaKnown RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 OR52Z1P0C646 297 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 ATP2B1P20020 1258 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 MSNP26038 577 aaKnown RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 ERCC5P28715 1186 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms