RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 CALCRLQ16602 461 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 ZCWPW2Q504Y3 356 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 SFMBT2Q5VUG0 894 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 MCTP2Q6DN12 878 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 USP17L1Q7RTZ2 530 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 CNPY4Q8N129 248 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 RAD54LQ92698 747 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 CEP63Q96MT8 703 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 PNMA5Q96PV4 448 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 SEC63Q9UGP8 760 aaKnown RBP9.66□□□□□ -0.86
TDP1-204ENST00000545686 ATP8B3O60423 1300 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 IRS2Q9Y4H2 1338 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 BTNL10A8MVZ5 291 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 HEXIM1O94992 359 aaKnown RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 MARSP56192 900 aaKnown RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 PPP4CP60510 307 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 RPS8P62241 208 aaKnown RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 GFPT1Q06210 699 aaPredicted RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 TMEM119Q4V9L6 283 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 TDRD12Q587J7 1177 aaKnown RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 TBCKQ8TEA7 893 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 HPS3Q969F9 1004 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 INPP4AQ96PE3 977 aaPredicted RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 EPN3Q9H201 632 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 ATP6V0A2Q9Y487 856 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 COL4A3BPQ9Y5P4 624 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 KIAA0754O94854 1291 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 FSBPO95073 299 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 BAG3O95817 575 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 GLI1P08151 1106 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 RASA1P20936 1047 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 LIG3P49916 1009 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 TNNC1P63316 161 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 FKBP3Q00688 224 aaKnown RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 SLC18A3Q16572 532 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 MEI1Q5TIA1 1274 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 MYOCDQ8IZQ8 938 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 WDR66Q8TBY9 1149 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 DYNLL2Q96FJ2 89 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 CCDC43Q96MW1 224 aaKnown RBP9.65□□□□□ -0.86
TDP1-204ENST00000545686 PSMB7Q99436 277 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 NYXQ9GZU5 481 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 EHD4Q9H223 541 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 SMARCAL1Q9NZC9 954 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 EHD2Q9NZN4 543 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 STX8Q9UNK0 236 aa9.65□□□□□ -0.86
TDP1-204ENST00000545686 ZNF233A6NK53 670 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 SLC26A4O43511 780 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 MYBP10242 640 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 NR1D1P20393 614 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 LSP1P33241 339 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 HSPA9P38646 679 aaKnown RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 CARSP49589 748 aaKnown RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 KCNMA1Q12791 1236 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 PDCLQ13371 301 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 CDC37Q16543 378 aaPredicted RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 C10orf76Q5T2E6 689 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 LRIG3Q6UXM1 1119 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 PRPF38AQ8NAV1 312 aaKnown RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 C3orf20Q8ND61 904 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 KAT2BQ92831 832 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 ATP6V1G3Q96LB4 118 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 EPB41L5Q9HCM4 733 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 NFU1Q9UMS0 254 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 MEFVO15553 781 aaPredicted RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 BUB1O43683 1085 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 PALMO75781 387 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 NOL4O94818 638 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 LDHBP07195 334 aaKnown RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 TXKP42681 527 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 NOVP48745 357 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 GUCY2DQ02846 1103 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 FAM83BQ5T0W9 1011 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 KRT79Q5XKE5 535 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 ARFGAP2Q8N6H7 521 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 NEDD1Q8NHV4 660 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 SH3RF3Q8TEJ3 882 aaPredicted RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 PIK3R5Q8WYR1 880 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 TANGO6Q9C0B7 1094 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 GEMIN8Q9NWZ8 242 aaKnown RBP9.64□□□□□ -0.87
TDP1-204ENST00000545686 TFCP2L1Q9NZI6 479 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 TMEM59LQ9UK28 342 aa9.64□□□□□ -0.87
TDP1-204ENST00000545686 TLR2O60603 784 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 PPP1R37O75864 691 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 KRT14P02533 472 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 LDHCP07864 332 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 NAP1L1P55209 391 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 IRX3P78415 501 aaPredicted RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 CUL1Q13616 776 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 PLCB4Q15147 1175 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 PTGISQ16647 500 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 PPP1R18Q6NYC8 613 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 C16orf86Q6ZW13 317 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 C10orf71Q711Q0 1435 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 ZC3H3Q8IXZ2 948 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 USP38Q8NB14 1042 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 CASKIN2Q8WXE0 1202 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 DDX12PQ92771 950 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 MS4A14Q96JA4 679 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 HINFPQ9BQA5 517 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms