RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 PTPN21Q16825 1174 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 LY6KQ17RY6 165 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 SBK1Q52WX2 424 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 CCDC62Q6P9F0 684 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 DGLUCYQ7Z3D6 616 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 FIBCD1Q8N539 461 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 LMAN2LQ9H0V9 348 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 BARX2Q9UMQ3 279 aaPredicted RBP18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 SYNPO2Q9UMS6 1093 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 ACACBO00763 2458 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 BAHCC1Q9P281 2608 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 GSG1L2A8MUP6 293 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 ICAM1P05362 532 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 EDNRBP24530 442 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 DNAJB1P25685 340 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 THPOP40225 353 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 COASYQ13057 564 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 IL17RAQ96F46 866 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 C11orf84Q9BUA3 381 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 PHF7Q9BWX1 381 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 BOLA2Q9H3K6 86 aa18.28■□□□□ 0.52
CLSTN3-216ENST00000545663 EMSYQ7Z589 1322 aa18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 CCER2I3L3R5 266 aa18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 PLA2G6O60733 806 aa18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 RB1P06400 928 aa18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 CASTP20810 708 aaKnown RBP18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 RCSD1Q6JBY9 416 aa18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 CLEC4DQ8WXI8 215 aa18.27■□□□□ 0.52
CLSTN3-216ENST00000545663 LOC102724159A0A0B4J2E5 919 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 GLP2RO95838 553 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 ZNF286BP0CG31 522 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 SLC16A2P36021 539 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 RBM10P98175 930 aaKnown RBP18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 MFSD10Q14728 455 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 PWP2Q15269 919 aaKnown RBP18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 UBE3CQ15386 1083 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 KIAA0753Q2KHM9 967 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 RBM23Q86U06 439 aaKnown RBP18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 STRBPQ96SI9 672 aaKnown RBP18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 MTMR7Q9Y216 660 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 CHD8Q9HCK8 2581 aa18.26■□□□□ 0.51
CLSTN3-216ENST00000545663 IPO8O15397 1037 aaKnown RBP18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 GH1P01241 217 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 MMP1P03956 469 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 TTBK2Q6IQ55 1244 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 RNF207Q6ZRF8 634 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 EFHBQ8N7U6 833 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 NEDD1Q8NHV4 660 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 SEPT8Q92599 483 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 PCDHGC5Q9Y5F6 944 aa18.25■□□□□ 0.51
CLSTN3-216ENST00000545663 RALGAPA2Q2PPJ7 1873 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 HAS3O00219 553 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 ARP10275 920 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 NRIP1P48552 1158 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 RPS6P62753 249 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 SEPT14Q6ZU15 432 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 RHPN1Q8TCX5 695 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 RANBP17Q9H2T7 1088 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 PLAGL2Q9UPG8 496 aa18.24■□□□□ 0.51
CLSTN3-216ENST00000545663 TSPY3P0CV98 308 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 TSPY8P0CW00 308 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 SP100P23497 879 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 TFAP4Q01664 338 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 DGKDQ16760 1214 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 ZBTB33Q86T24 672 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 SERINC5Q86VE9 423 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 ERC1Q8IUD2 1116 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 DHX37Q8IY37 1157 aaKnown RBP18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 SMOC2Q9H3U7 446 aa18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 EPB41L4AQ9HCS5 686 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-216ENST00000545663 CTSHP09668 335 aa18.22■□□□□ 0.51
CLSTN3-216ENST00000545663 KIAA2013Q8IYS2 634 aa18.22■□□□□ 0.51
CLSTN3-216ENST00000545663 CLP1Q92989 425 aaKnown RBP18.22■□□□□ 0.51
CLSTN3-216ENST00000545663 CEP250Q9BV73 2442 aa18.22■□□□□ 0.51
CLSTN3-216ENST00000545663 NMT2O60551 498 aa18.21■□□□□ 0.51
CLSTN3-216ENST00000545663 F2P00734 622 aa18.21■□□□□ 0.51
CLSTN3-216ENST00000545663 MCTP2Q6DN12 878 aa18.21■□□□□ 0.51
CLSTN3-216ENST00000545663 CEP85Q6P2H3 762 aa18.21■□□□□ 0.51
CLSTN3-216ENST00000545663 KREMEN2Q8NCW0 462 aa18.21■□□□□ 0.51
CLSTN3-216ENST00000545663 SUSD6Q92537 303 aa18.21■□□□□ 0.51
CLSTN3-216ENST00000545663 ITGB1P05556 798 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 IFIT2P09913 472 aaKnown RBP18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 DNERQ8NFT8 737 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 VN1R2Q8NFZ6 395 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 SPPL3Q8TCT6 385 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 MPHOSPH6Q99547 160 aaKnown RBP18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 HAUS7Q99871 368 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 RC3H2Q9HBD1 1191 aaKnown RBP18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 STX8Q9UNK0 236 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 ADGRA3Q8IWK6 1321 aa18.2■□□□□ 0.5
CLSTN3-216ENST00000545663 PLIN4Q96Q06 1357 aa18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 PER2O15055 1255 aa18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 SORBS3O60504 671 aa18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 BRD1O95696 1058 aa18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 CCDC96Q2M329 555 aa18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 ASTLQ6HA08 431 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 GIMAP6Q6P9H5 292 aa18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 CLASRPQ8N2M8 674 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-216ENST00000545663 KATNAL1Q9BW62 490 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms