RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PLEKHA8P1O95397 391 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 ATP5DP30049 168 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 LONP1P36776 959 aaKnown RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 TBX2Q13207 712 aaPredicted RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 TTLL11Q8NHH1 800 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 ZKSCAN4Q969J2 545 aaPredicted RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 DHTKD1Q96HY7 919 aaPredicted RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 STRBPQ96SI9 672 aaKnown RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 THAP9Q9H5L6 903 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 RNF14Q9UBS8 474 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 CAPN11Q9UMQ6 739 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 GNA11P29992 359 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 TRAF1Q13077 416 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 GLE1Q53GS7 698 aaKnown RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 CCDC65Q8IXS2 484 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 CHMP6Q96FZ7 201 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 DDX23Q9BUQ8 820 aaKnown RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 DNAJC17Q9NVM6 304 aaKnown RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 ARHGAP44Q17R89 818 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 KIF2BQ8N4N8 673 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 MDM1Q8TC05 714 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SMC6Q96SB8 1091 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 PLEKP08567 350 aaPredicted RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 LIFRP42702 1097 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 CALR3Q96L12 384 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 NUCKS1Q9H1E3 243 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 NOD2Q9HC29 1040 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 FAM53CQ9NYF3 392 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 LIMA1Q9UHB6 759 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 ZSCAN5CA6NGD5 496 aaPredicted RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 RANBP1P43487 201 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 RASGRF1Q13972 1273 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SWT1Q5T5J6 900 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SEPT14Q6ZU15 432 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 KAT2BQ92831 832 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 BICD1Q96G01 975 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SAP30BPQ9UHR5 308 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 PCDHB13Q9Y5F0 798 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 IKBKGQ9Y6K9 419 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 ADGRL3Q9HAR2 1447 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SOS2Q07890 1332 aaPredicted RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 DAPK3O43293 454 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 ZNF18P17022 549 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SLC1A4P43007 532 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 PPP2R5BQ15173 497 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 NONOQ15233 471 aaKnown RBP eCLIP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 NBPF3Q9H094 633 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 CNOT10Q9H9A5 744 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 LY9Q9HBG7 655 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 SNX24Q9Y343 169 aa15.53■□□□□ 0.08
LIMS1-215ENST00000544547 RTCBQ9Y3I0 505 aaKnown RBP15.53■□□□□ 0.08
LIMS1-215ENST00000544547 RPS6KA5O75582 802 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 TRIM37O94972 964 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 BAG2O95816 211 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 EEF2P13639 858 aaKnown RBP15.52■□□□□ 0.08
LIMS1-215ENST00000544547 MAN2A1Q16706 1144 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 NLRP10Q86W26 655 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 MYOCDQ8IZQ8 938 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 SYCE1Q8N0S2 351 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 IQCGQ9H095 443 aaKnown RBP15.52■□□□□ 0.08
LIMS1-215ENST00000544547 TAF1DQ9H5J8 278 aaPredicted RBP15.52■□□□□ 0.08
LIMS1-215ENST00000544547 VCPKMTQ9H867 229 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 KANSL2Q9H9L4 492 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 ANKARQ7Z5J8 1434 aa15.52■□□□□ 0.08
LIMS1-215ENST00000544547 BMP6P22004 513 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 CRYMQ14894 314 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 HHATQ5VTY9 493 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 ZNF804AQ7Z570 1209 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 HOMER2Q9NSB8 354 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 UTYO14607 1347 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 MAP3K15Q6ZN16 1313 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 MROH5Q6ZUA9 1318 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 GOLGA8HP0CJ92 632 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 DYNLL1P63167 89 aaKnown RBP15.52■□□□□ 0.07
LIMS1-215ENST00000544547 BIRC3Q13489 604 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 FAM47EQ6ZV65 393 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 NEK9Q8TD19 979 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 IQCDQ96DY2 449 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 OSBPL1AQ9BXW6 950 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 ATG3Q9NT62 314 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 AMACRQ9UHK6 382 aa15.52■□□□□ 0.07
LIMS1-215ENST00000544547 PPP1R14CQ8TAE6 165 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 HPS3Q969F9 1004 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 MIEF2Q96C03 454 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 BIN2Q9UBW5 565 aaPredicted RBP15.51■□□□□ 0.07
LIMS1-215ENST00000544547 INTUQ9ULD6 942 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 CAPN6Q9Y6Q1 641 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 CACNB1Q02641 598 aaPredicted RBP15.51■□□□□ 0.07
LIMS1-215ENST00000544547 PSMD2Q13200 908 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 NYXQ9GZU5 481 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 PLCG1P19174 1290 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 DIXDC1Q155Q3 683 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 LRRC23Q53EV4 343 aaPredicted RBP15.51■□□□□ 0.07
LIMS1-215ENST00000544547 ZMYND12Q9H0C1 365 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 ARPP21Q9UBL0 812 aaPredicted RBP15.51■□□□□ 0.07
LIMS1-215ENST00000544547 CROCCP2Q86T23 111 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 UBL4BQ8N7F7 174 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 MARCH10Q8NA82 808 aaPredicted RBP15.51■□□□□ 0.07
LIMS1-215ENST00000544547 CCHCR1Q8TD31 782 aa15.51■□□□□ 0.07
LIMS1-215ENST00000544547 DISC1Q9NRI5 854 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms