RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CEP63Q96MT8 703 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 PNMA5Q96PV4 448 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 TLR10Q9BXR5 811 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 MMRN2Q9H8L6 949 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 SLC39A2Q9NP94 309 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 FAM207AQ9NSI2 230 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-208ENST00000543633 GRIN2DO15399 1336 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 GNA14O95837 355 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 SERPING1P05155 500 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 PAK2Q13177 524 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 CALCRLQ16602 461 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 EMC10Q5UCC4 262 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 NFRKBQ6P4R8 1299 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 POTEAQ6S8J7 498 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 TADA2BQ86TJ2 420 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 SPATS2Q86XZ4 545 aaKnown RBP15.17■□□□□ 0.02
VPS33A-208ENST00000543633 POTEDQ86YR6 584 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 SMCR8Q8TEV9 937 aaPredicted RBP15.17■□□□□ 0.02
VPS33A-208ENST00000543633 GDF3Q9NR23 364 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 STX8Q9UNK0 236 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 LEMD3Q9Y2U8 911 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 EBAG9O00559 213 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 GNPATO15228 680 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 MARSP56192 900 aaKnown RBP15.17■□□□□ 0.02
VPS33A-208ENST00000543633 SLC9C1Q4G0N8 1177 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 ZCWPW2Q504Y3 356 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 KLHDC7AQ5VTJ3 777 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 HGSNATQ68CP4 663 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 CACNA2D4Q7Z3S7 1137 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 CD302Q8IX05 232 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 RIOX1Q9H6W3 641 aa15.17■□□□□ 0.02
VPS33A-208ENST00000543633 SRRM3A6NNA2 597 aaPredicted RBP15.16■□□□□ 0.02
VPS33A-208ENST00000543633 PLCG2P16885 1265 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 EZH2Q15910 746 aaKnown RBP15.16■□□□□ 0.02
VPS33A-208ENST00000543633 TBC1D9BQ66K14 1250 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 EYA3Q99504 573 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 COL4A3BPQ9Y5P4 624 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 BTNL10A8MVZ5 291 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 FKBP3Q00688 224 aaKnown RBP15.16■□□□□ 0.02
VPS33A-208ENST00000543633 KRT79Q5XKE5 535 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 MYOCDQ8IZQ8 938 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 HDAC7Q8WUI4 952 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 GDAP1L1Q96MZ0 367 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 NARFQ9UHQ1 456 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 PCDHGC5Q9Y5F6 944 aa15.16■□□□□ 0.02
VPS33A-208ENST00000543633 MYH7BA7E2Y1 1941 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 CDK8P49336 464 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 ADCY7P51828 1080 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 ASPRV1Q53RT3 343 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 SLC27A3Q5K4L6 730 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 HYIQ5T013 277 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 SFMBT2Q5VUG0 894 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 WHAMMQ8TF30 809 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 MTMR8Q96EF0 704 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 NAP1L4Q99733 375 aaKnown RBP15.15■□□□□ 0.02
VPS33A-208ENST00000543633 PAGR1Q9BTK6 254 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 RTFDC1Q9BY42 306 aaPredicted RBP15.15■□□□□ 0.02
VPS33A-208ENST00000543633 RTCBQ9Y3I0 505 aaKnown RBP15.15■□□□□ 0.02
VPS33A-208ENST00000543633 KDM3AQ9Y4C1 1321 aa15.15■□□□□ 0.02
VPS33A-208ENST00000543633 TXKP42681 527 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 GNGT1P63211 74 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 NAB2Q15742 525 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 PPP4R3AQ6IN85 833 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 ZNF804AQ7Z570 1209 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 ZC3H3Q8IXZ2 948 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 TSEN2Q8NCE0 465 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 TGFBRAP1Q8WUH2 860 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 EEF2KMTQ96G04 330 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 DRC1Q96MC2 740 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 SETDB2Q96T68 719 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 RBM12Q9NTZ6 932 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 ATP6V0A2Q9Y487 856 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 UBR3Q6ZT12 1888 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 NKRFO15226 690 aaKnown RBP eCLIP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 GOLGA8HP0CJ92 632 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 GCFC2P16383 781 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 SLC1A4P43007 532 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 TDRD12Q587J7 1177 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 C10orf76Q5T2E6 689 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 KDM7AQ6ZMT4 941 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 B4GALNT4Q76KP1 1039 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 PACS2Q86VP3 889 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 NBPF5PQ86XG9 351 aaPredicted RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 SUGP1Q8IWZ8 645 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 SLC44A5Q8NCS7 719 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 BCAS4Q8TDM0 211 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 SNX29Q8TEQ0 813 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 DDX12PQ92771 950 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 ARHGEF1Q92888 912 aaKnown RBP15.14■□□□□ 0.01
VPS33A-208ENST00000543633 HPS3Q969F9 1004 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 SALL4Q9UJQ4 1053 aa15.14■□□□□ 0.01
VPS33A-208ENST00000543633 CCT5P48643 541 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 KCNMA1Q12791 1236 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 SLC18A3Q16572 532 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 TTMPQ5BVD1 217 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 ICE2Q659A1 982 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 TPTE2Q6XPS3 522 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 PPP4R3CPQ6ZMV5 832 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 TXNRD3Q86VQ6 643 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 IQCKQ8N0W5 287 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms