RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CAPN2P17655 700 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 RBM5P52756 815 aaKnown RBP eCLIP10.96□□□□□ -0.65
SS18-205ENST00000542420 ARHGAP4P98171 946 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 EDRF1Q3B7T1 1238 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 FAM160B2Q86V87 743 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 SYN2Q92777 582 aaPredicted RBP10.96□□□□□ -0.65
SS18-205ENST00000542420 GOLGA1Q92805 767 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 GMLQ99445 158 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 NAPGQ99747 312 aaPredicted RBP10.96□□□□□ -0.65
SS18-205ENST00000542420 POLR3CQ9BUI4 534 aaPredicted RBP10.96□□□□□ -0.65
SS18-205ENST00000542420 GOPCQ9HD26 462 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 FAM184BQ9ULE4 1060 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 TMX2Q9Y320 296 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 FER1L6Q2WGJ9 1857 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 SPDYE2BA6NHP3 402 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 POTEMA6NI47 508 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 SPDYE3A6NKU9 549 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 PSMD14O00487 310 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 LCA5LO95447 670 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 SPDYE6P0CI01 402 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 FCER1AP12319 257 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 RPA1P27694 616 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 SLC16A2P36021 539 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 ARHGAP25P42331 645 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 FKBP3Q00688 224 aaKnown RBP10.96□□□□□ -0.66
SS18-205ENST00000542420 ATP2B2Q01814 1243 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 MAP3K10Q02779 954 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 COASYQ13057 564 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 BMS1Q14692 1282 aaKnown RBP10.96□□□□□ -0.66
SS18-205ENST00000542420 MTF1Q14872 753 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 FAM26FQ5R3K3 315 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 LRRC55Q6ZSA7 311 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 SRGAP1Q7Z6B7 1085 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 CLEC10AQ8IUN9 316 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 MSL3Q8N5Y2 521 aaKnown RBP10.96□□□□□ -0.66
SS18-205ENST00000542420 AGBL3Q8NEM8 1001 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 SLC16A10Q8TF71 515 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 CPLX3Q8WVH0 158 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 RPGRIP1Q96KN7 1286 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 PLIN2Q99541 437 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 DESI2Q9BSY9 194 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 KCNQ5Q9NR82 932 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 PNMA2Q9UL42 364 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 MAPK8IP1Q9UQF2 711 aa10.96□□□□□ -0.66
SS18-205ENST00000542420 BRCA1P38398 1863 aaKnown RBP10.96□□□□□ -0.66
SS18-205ENST00000542420 ANO9A1A5B4 782 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 B4DLN1 442 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 PPIP5K2O43314 1243 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 IPO7O95373 1038 aaKnown RBP10.95□□□□□ -0.66
SS18-205ENST00000542420 TRIM21P19474 475 aaKnown RBP10.95□□□□□ -0.66
SS18-205ENST00000542420 SPIRE1Q08AE8 756 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 AOC3Q16853 763 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 SPDYE2Q495Y8 402 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 FBXO38Q6PIJ6 1188 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 ZNF771Q7L3S4 317 aaPredicted RBP10.95□□□□□ -0.66
SS18-205ENST00000542420 CHURC1Q8WUH1 139 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 CAMKK2Q96RR4 588 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 CARD6Q9BX69 1037 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 NDST4Q9H3R1 872 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 PANK4Q9NVE7 773 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 PLAGL2Q9UPG8 496 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 SIK3Q9Y2K2 1263 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 ATP8B3O60423 1300 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 KRT86O43790 486 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 PLA2G4BP0C869 781 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 PTPN21Q16825 1174 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 ERCC6LQ2NKX8 1250 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 KIF4BQ2VIQ3 1234 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 WDR59Q6PJI9 974 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 SLC39A2Q9NP94 309 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 PCDHA2Q9Y5H9 948 aa10.95□□□□□ -0.66
SS18-205ENST00000542420 UBE4BO95155 1302 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 SLC12A3P55017 1021 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 GHRHRQ02643 423 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 BRD3Q15059 726 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 NFIL3Q16649 462 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 BMT2Q1RMZ1 405 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 TTLL6Q8N841 843 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 SYT2Q8N9I0 419 aaPredicted RBP10.94□□□□□ -0.66
SS18-205ENST00000542420 PURBQ96QR8 312 aaKnown RBP10.94□□□□□ -0.66
SS18-205ENST00000542420 CSRNP1Q96S65 589 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 RANBP17Q9H2T7 1088 aaKnown RBP10.94□□□□□ -0.66
SS18-205ENST00000542420 TUFT1Q9NNX1 390 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 DAAM1Q9Y4D1 1078 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 COL4A3BPQ9Y5P4 624 aa10.94□□□□□ -0.66
SS18-205ENST00000542420 SSU72P8A0A1W2PR75 194 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 YDJCA8MPS7 323 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 GAP43P17677 238 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 STAT2P52630 851 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 TCP10Q12799 353 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 MAPK8IP2Q13387 824 aaPredicted RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 ZNF569Q5MCW4 686 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 KCNK18Q7Z418 384 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 KRT222Q8N1A0 295 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 HNRNPLLQ8WVV9 542 aaKnown RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 LENG9Q96B70 501 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 NUDT12Q9BQG2 462 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 TDRD3Q9H7E2 651 aaKnown RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.93□□□□□ -0.66
SS18-205ENST00000542420 KCND2Q9NZV8 630 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms