RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 DHX32Q7L7V1 743 aaKnown RBP10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 TMTC2Q8N394 836 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 CAGE1Q8TC20 777 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 IGDCC4Q8TDY8 1250 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 AFAP1L1Q8TED9 768 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 DCAF4Q8WV16 495 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 TGS1Q96RS0 853 aaKnown RBP10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 TM6SF1Q9BZW5 370 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 LMCD1Q9NZU5 365 aa10.1□□□□□ -0.79
CLSTN3-212ENST00000541770 NCOR1O75376 2440 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 NLRC5Q86WI3 1866 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 LINC01553A4QN01 128 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 A6NJR5 290 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 PRC1O43663 620 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 SNHG28P0DPA3 235 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 ALADP13716 330 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 SELPP16109 830 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 LIFRP42702 1097 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 MRE11P49959 708 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 RPS6P62753 249 aaKnown RBP10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 EXOSC10Q01780 885 aaKnown RBP10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 WTAPQ15007 396 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 LEXMQ3ZCV2 418 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 SEPT14Q6ZU15 432 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 FAM178BQ8IXR5 827 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 FBXL16Q8N461 479 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 PNMA1Q8ND90 353 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 AFG1LQ8WV93 481 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 RAD9AQ99638 391 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 ALG1Q9BT22 464 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 KAT14Q9H8E8 782 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 MYH6P13533 1939 aa10.09□□□□□ -0.79
CLSTN3-212ENST00000541770 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 LOC102724159A0A0B4J2E5 919 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 B4DLN1 442 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 H3BQ06 376 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 SH2B2O14492 632 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 NBNO60934 754 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 ARIH2O95376 493 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 GJB5O95377 273 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 MMP3P08254 477 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 PDHBP11177 359 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 CKBP12277 381 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 MRPL12P52815 198 aaKnown RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 ERVK-21P61565 698 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 COL9A3Q14050 684 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 IKBKEQ14164 716 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 PWP2Q15269 919 aaKnown RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 LY6KQ17RY6 165 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 USH1GQ495M9 461 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 BLOC1S2Q6QNY1 142 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 C7orf31Q8N865 590 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 FBXO22Q8NEZ5 403 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 CLEC4DQ8WXI8 215 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 JAKMIP1Q96N16 626 aaKnown RBP10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 C17orf80Q9BSJ5 609 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 LY9Q9HBG7 655 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 ZSWIM6Q9HCJ5 1215 aa10.08□□□□□ -0.8
CLSTN3-212ENST00000541770 MICAL3Q7RTP6 2002 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 BDP1A6H8Y1 2624 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 ABHD14A-ACY1A0A1B0GW23 586 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 GH1P01241 217 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 CASTP20810 708 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 RPS6KB1P23443 525 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 RBM25P49756 843 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 GPNMBQ14956 572 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 TCTN1Q2MV58 587 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 GPATCH4Q5T3I0 446 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 BTNL9Q6UXG8 535 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 RUFY3Q7L099 469 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 SGMS1Q86VZ5 419 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 MYOCDQ8IZQ8 938 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 DNERQ8NFT8 737 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 DHX38Q92620 1227 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 MAP3K14Q99558 947 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 AGXT2Q9BYV1 514 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 BACH2Q9BYV9 841 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 UPF2Q9HAU5 1272 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 HDAC6Q9UBN7 1215 aa10.07□□□□□ -0.8
CLSTN3-212ENST00000541770 GRXCR2A6NFK2 248 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 DCXO43602 365 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 PARNO95453 639 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 PSEN2P49810 448 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 ZNF543Q08ER8 600 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 TROAPQ12815 778 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 PTPROQ16827 1216 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 ASPRV1Q53RT3 343 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 ZNF618Q5T7W0 954 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 CATIPQ7Z7H3 387 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 DHX37Q8IY37 1157 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 FBXL18Q96ME1 805 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 SENP2Q9HC62 589 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 GTF2IRD1Q9UHL9 959 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 INSL6Q9Y581 213 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 CYP46A1Q9Y6A2 500 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 TRANK1O15050 2925 aa10.06□□□□□ -0.8
CLSTN3-212ENST00000541770 CCDC69A6NI79 296 aa10.05□□□□□ -0.8
CLSTN3-212ENST00000541770 SORBS3O60504 671 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms