RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 FLCNQ8NFG4 579 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 DNERQ8NFT8 737 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 PPP1R13LQ8WUF5 828 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 RTKNQ9BST9 563 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.24□□□□□ -0.61
YBX3-211ENST00000541351 TSHZ2Q9NRE2 1034 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 MAP1BP46821 2468 aaKnown RBP11.24□□□□□ -0.61
YBX3-211ENST00000541351 MYO5AQ9Y4I1 1855 aaKnown RBP11.23□□□□□ -0.61
YBX3-211ENST00000541351 BRD1O95696 1058 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 ADRB1P08588 477 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 RFX1P22670 979 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 LMNB2Q03252 620 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 UBE3AQ05086 875 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 BAATQ14032 418 aaPredicted RBP11.23□□□□□ -0.61
YBX3-211ENST00000541351 MBTPS1Q14703 1052 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 MFSD10Q14728 455 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 TRIM71Q2Q1W2 868 aaKnown RBP11.23□□□□□ -0.61
YBX3-211ENST00000541351 CES5AQ6NT32 575 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 TRAF7Q6Q0C0 670 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 RBM23Q86U06 439 aaKnown RBP11.23□□□□□ -0.61
YBX3-211ENST00000541351 ZNF444Q8N0Y2 327 aaPredicted RBP11.23□□□□□ -0.61
YBX3-211ENST00000541351 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 MICAL1Q8TDZ2 1067 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 AFG1LQ8WV93 481 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 ALG1Q9BT22 464 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 ANTXR1Q9H6X2 564 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 ARMT1Q9H993 441 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 RNF216Q9NWF9 866 aaPredicted RBP11.23□□□□□ -0.61
YBX3-211ENST00000541351 DNAH14Q0VDD8 3507 aa11.23□□□□□ -0.61
YBX3-211ENST00000541351 SURF6O75683 361 aaKnown RBP11.22□□□□□ -0.61
YBX3-211ENST00000541351 MBD4O95243 580 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 ICAM1P05362 532 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 DMDP11532 3685 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 KIAA0753Q2KHM9 967 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 MUM1L1Q5H9M0 696 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 RUFY4Q6ZNE9 571 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 CFAP47Q6ZTR5 3102 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 SERINC5Q86VE9 423 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 GMCL1Q96IK5 515 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 DMXL1Q9Y485 3027 aa11.22□□□□□ -0.61
YBX3-211ENST00000541351 DDX49Q9Y6V7 483 aaKnown RBP11.22□□□□□ -0.61
YBX3-211ENST00000541351 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.21□□□□□ -0.61
YBX3-211ENST00000541351 GLP2RO95838 553 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 F2P00734 622 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 CT47B1P0C2W7 299 aaPredicted RBP11.21□□□□□ -0.61
YBX3-211ENST00000541351 GNAT1P11488 350 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 ATXN1P54253 815 aaKnown RBP11.21□□□□□ -0.61
YBX3-211ENST00000541351 TPRNQ4KMQ1 711 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 RNF207Q6ZRF8 634 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 SPPL3Q8TCT6 385 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 POF1BQ8WVV4 589 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 KAT2BQ92831 832 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 COPS5Q92905 334 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.21□□□□□ -0.61
YBX3-211ENST00000541351 CCDC8Q9H0W5 538 aaPredicted RBP11.21□□□□□ -0.61
YBX3-211ENST00000541351 MTMR4Q9NYA4 1195 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 NCDNQ9UBB6 729 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 FBXL21Q9UKT6 434 aa11.21□□□□□ -0.61
YBX3-211ENST00000541351 NOB1Q9ULX3 412 aaKnown RBP11.21□□□□□ -0.61
YBX3-211ENST00000541351 PNMA6EA0A0J9YXQ4 647 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 KINO60870 393 aaKnown RBP11.2□□□□□ -0.62
YBX3-211ENST00000541351 RASA1P20936 1047 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 EDNRBP24530 442 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 CALML3P27482 149 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 ITIH3Q06033 890 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 LAMC2Q13753 1193 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 CAMK1Q14012 370 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 CTR9Q6PD62 1173 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 TMEM184AQ6ZMB5 413 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 ADGRD2Q7Z7M1 963 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 CMTR2Q8IYT2 770 aaKnown RBP11.2□□□□□ -0.62
YBX3-211ENST00000541351 TDRD5Q8NAT2 981 aaKnown RBP11.2□□□□□ -0.62
YBX3-211ENST00000541351 ATP8B4Q8TF62 1192 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 ATP6V0A1Q93050 837 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 MAF1Q9H063 256 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 AAASQ9NRG9 546 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 SLC4A4Q9Y6R1 1079 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 SPTBN2O15020 2390 aa11.2□□□□□ -0.62
YBX3-211ENST00000541351 CYP2D7A0A087X1C5 515 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 C17orf102A2RUQ5 167 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 STK25O00506 426 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 ITGB1P05556 798 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 SP100P23497 879 aaPredicted RBP11.19□□□□□ -0.62
YBX3-211ENST00000541351 MTHFRP42898 656 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 CWF19L1Q69YN2 538 aaKnown RBP11.19□□□□□ -0.62
YBX3-211ENST00000541351 ANKRD54Q6NXT1 300 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 CHST3Q7LGC8 479 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 ERC1Q8IUD2 1116 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 PPTC7Q8NI37 304 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 RASGRP4Q8TDF6 673 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 ARHGAP45Q92619 1136 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 EMID1Q96A84 441 aaPredicted RBP11.19□□□□□ -0.62
YBX3-211ENST00000541351 CEP95Q96GE4 821 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 PCDHB12Q9Y5F1 795 aa11.19□□□□□ -0.62
YBX3-211ENST00000541351 ANKRD11Q6UB99 2663 aaPredicted RBP11.19□□□□□ -0.62
YBX3-211ENST00000541351 TCRBV5S4A2TA0A5A2 114 aa11.18□□□□□ -0.62
YBX3-211ENST00000541351 HAS3O00219 553 aa11.18□□□□□ -0.62
YBX3-211ENST00000541351 PRKAB2O43741 272 aa11.18□□□□□ -0.62
YBX3-211ENST00000541351 PPFIA4O75335 1185 aa11.18□□□□□ -0.62
YBX3-211ENST00000541351 LINC00271P0C7V0 271 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms