RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NFE2L3Q9Y4A8 694 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 MYH8P13535 1937 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 KAT6BQ8WYB5 2073 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 GOLGA6L10A0A0M3HER8 536 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 TEX33O43247 280 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 PRC1O43663 620 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 PDGFRBP09619 1106 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 FAM153BP0C7A2 387 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 MSH2P43246 934 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 PEX5P50542 639 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 LACTBP83111 547 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 FAM153CQ494X1 144 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF772Q68DY9 489 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 IQCEQ6IPM2 695 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 MIGA2Q7L4E1 593 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 ABTB1Q969K4 478 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 HAPLN3Q96S86 360 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 TIPINQ9BVW5 301 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 LGR6Q9HBX8 967 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 SUCLA2Q9P2R7 463 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 DDX25Q9UHL0 483 aaKnown RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 FAM153AQ9UHL3 310 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 STK38LQ9Y2H1 464 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 TIMM22Q9Y584 194 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 RBM8AQ9Y5S9 174 aaKnown RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 TIMM44O43615 452 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ORC4O43929 436 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ZMYM6O95789 1325 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 RARAP10276 462 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 PFKFB1P16118 471 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 RPS6KB1P23443 525 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 SMARCA1P28370 1054 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 SF3A3Q12874 501 aaKnown RBP eCLIP10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ITGA7Q13683 1181 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 RCN1Q15293 331 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 USH1GQ495M9 461 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TBC1D9BQ66K14 1250 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TTC30AQ86WT1 665 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 CNTROBQ8N137 903 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ANKS4BQ8N8V4 417 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 FBF1Q8TES7 1133 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 RSPH1Q8WYR4 309 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 AGBL1Q96MI9 1066 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 OSBPL10Q9BXB5 764 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TAOK3Q9H2K8 898 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TMBIM4Q9HC24 238 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 DDX21Q9NR30 783 aaKnown RBP eCLIP10.35□□□□□ -0.75
CLIP1-214ENST00000540539 CCDC87Q9NVE4 849 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ARHGEF38Q9NXL2 777 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TUBA8Q9NY65 449 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-214ENST00000540539 STIM2Q9P246 746 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TSKSQ9UJT2 592 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 MYH13Q9UKX3 1938 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 REXO2Q9Y3B8 237 aaKnown RBP10.35□□□□□ -0.75
CLIP1-214ENST00000540539 DAAM1Q9Y4D1 1078 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 LRRC37A3O60309 1634 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TNS2Q63HR2 1409 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 A0A0G2JS52 829 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 PNMA6EA0A0J9YXQ4 647 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 A0A1B0GTH6 734 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 DYTNA2CJ06 578 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 CETN3O15182 167 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TROVE2P10155 538 aaKnown RBP eCLIP10.35□□□□□ -0.75
CLIP1-214ENST00000540539 PSMA5P28066 241 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TNFRSF8P28908 595 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 CASP14P31944 242 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 PNOCQ13519 176 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TRPM8Q7Z2W7 1104 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 LRRC43Q8N309 656 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 LINC00301Q8NCQ3 95 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 SNX27Q96L92 541 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 GBP5Q96PP8 586 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 PPP1R12CQ9BZL4 782 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ABCF3Q9NUQ8 709 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 CNOT8Q9UFF9 292 aaKnown RBP10.35□□□□□ -0.75
CLIP1-214ENST00000540539 ITGB1BP2Q9UKP3 347 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 TAF6LQ9Y6J9 622 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 SCN11AQ9UI33 1791 aa10.35□□□□□ -0.75
CLIP1-214ENST00000540539 MROH7-TTC4A0A0A0MT08 1334 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 ITIH6Q6UXX5 1313 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 RNMTO43148 476 aaKnown RBP10.34□□□□□ -0.75
CLIP1-214ENST00000540539 WFS1O76024 890 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 UBOX5O94941 541 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 ITGA2BP08514 1039 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 BMP6P22004 513 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 NFKBIAP25963 317 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 FXR1P51114 621 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLIP1-214ENST00000540539 CACNA2D1P54289 1103 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 RAD23BP54727 409 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 GPSM2P81274 684 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 FMR1Q06787 632 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLIP1-214ENST00000540539 FAAH2Q6GMR7 532 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 CYP26C1Q6V0L0 522 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 TMTC1Q8IUR5 882 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 NACC2Q96BF6 587 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 RETREG1Q9H6L5 497 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 ECT2Q9H8V3 914 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 USH1CQ9Y6N9 552 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 ASLP04424 464 aa10.34□□□□□ -0.75
CLIP1-214ENST00000540539 CYP1A1P04798 512 aaPredicted RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms