RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PPFIA4O75335 1185 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 GGPS1O95749 300 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 RPS6KB1P23443 525 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 CYP2C18P33260 490 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 MRPS9P82933 396 aaKnown RBP13.29□□□□□ -0.28
RTN3-209ENST00000538995 NEDD9Q14511 834 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 FAM47CQ5HY64 1035 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 CCDC82Q8N4S0 544 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 DEFB123Q8N688 67 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 KAT2BQ92831 832 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 SPATA33Q96N06 139 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 IL23AQ9NPF7 189 aa13.29□□□□□ -0.28
RTN3-209ENST00000538995 TMEM265A0A087WTH1 108 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 hCG_1642624A0A1W2PR95 340 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 SPDYE3A6NKU9 549 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 SPATA31C2B4DYI2 1134 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 PFKMP08237 780 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 METAP2P50579 478 aaKnown RBP eCLIP13.28□□□□□ -0.28
RTN3-209ENST00000538995 TMEM240Q5SV17 173 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 RASIP1Q5U651 963 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 WWC2Q6AWC2 1192 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 METTL7BQ6UX53 244 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 Q6ZUG5 572 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 BRF1Q92994 677 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 GPRASP2Q96D09 838 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 CDHR1Q96JP9 859 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 SENP7Q9BQF6 1050 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.28□□□□□ -0.28
RTN3-209ENST00000538995 GLT8D2Q9H1C3 349 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 WNT8AQ9H1J5 351 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 MTIF3Q9H2K0 278 aaKnown RBP13.28□□□□□ -0.28
RTN3-209ENST00000538995 EHMT1Q9H9B1 1298 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 MLXIPQ9HAP2 919 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 FAM217BQ9NTX9 383 aaPredicted RBP13.28□□□□□ -0.28
RTN3-209ENST00000538995 UMODL1Q5DID0 1318 aa13.28□□□□□ -0.28
RTN3-209ENST00000538995 HAS3O00219 553 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 CYP2C9P11712 490 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 CDC27P30260 824 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 RFC2P35250 354 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 PSEN2P49810 448 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 NAPAP54920 295 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 SP2Q02086 613 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 BFSP2Q13515 415 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 MFSD10Q14728 455 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 HSDL1Q3SXM5 330 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 C16orf59Q7L2K0 433 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 NLRX1Q86UT6 975 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 RPUSD2Q8IZ73 545 aaKnown RBP13.27□□□□□ -0.29
RTN3-209ENST00000538995 CCDC155Q8N6L0 562 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 GIMAP8Q8ND71 665 aaPredicted RBP13.27□□□□□ -0.29
RTN3-209ENST00000538995 CAGE1Q8TC20 777 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 HERVK_113Q902F9 699 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 GPKOWQ92917 476 aaPredicted RBP eCLIP13.27□□□□□ -0.29
RTN3-209ENST00000538995 RIC8AQ9NPQ8 531 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 MTMR10Q9NXD2 777 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 BARHL2Q9NY43 387 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 GTF2IRD1Q9UHL9 959 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 NOD1Q9Y239 953 aa13.27□□□□□ -0.29
RTN3-209ENST00000538995 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.26□□□□□ -0.29
RTN3-209ENST00000538995 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.26□□□□□ -0.29
RTN3-209ENST00000538995 STXBP3O00186 592 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 NOP56O00567 594 aaKnown RBP13.26□□□□□ -0.29
RTN3-209ENST00000538995 FOSP01100 380 aaPredicted RBP13.26□□□□□ -0.29
RTN3-209ENST00000538995 ZNF286BP0CG31 522 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 CPA1P15085 419 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 ADCY7P51828 1080 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 CCL23P55773 120 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 EVCP57679 992 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 RBL2Q08999 1139 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 APOBRQ0VD83 1088 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 SEMA3FQ13275 785 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 PTGISQ16647 500 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 UBE2SQ16763 222 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 ZNF697Q5TEC3 545 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 ZNF365Q70YC5 407 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 Q7L0L9 218 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 C7orf31Q8N865 590 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 USP26Q9BXU7 913 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 TM6SF1Q9BZW5 370 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 ZSWIM6Q9HCJ5 1215 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 RTEL1Q9NZ71 1219 aa13.26□□□□□ -0.29
RTN3-209ENST00000538995 NAP1L2Q9ULW6 460 aaPredicted RBP13.26□□□□□ -0.29
RTN3-209ENST00000538995 V9GY48 417 aaPredicted RBP13.26□□□□□ -0.29
RTN3-209ENST00000538995 ESYT2A0FGR8 921 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 MAFGO15525 162 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 FGBP02675 491 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 AP3B2Q13367 1082 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 PFKFB3Q16875 520 aaPredicted RBP13.25□□□□□ -0.29
RTN3-209ENST00000538995 KIAA0753Q2KHM9 967 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 GDF6Q6KF10 455 aaPredicted RBP13.25□□□□□ -0.29
RTN3-209ENST00000538995 TYW1BQ6NUM6 668 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 RUFY3Q7L099 469 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 RETREG2Q8NC44 543 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 AFAP1L1Q8TED9 768 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 ZFP91Q96JP5 570 aaPredicted RBP13.25□□□□□ -0.29
RTN3-209ENST00000538995 C16orf70Q9BSU1 422 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 PCDHA6Q9UN73 950 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 PCDHA8Q9Y5H6 950 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 UBIAD1Q9Y5Z9 338 aa13.25□□□□□ -0.29
RTN3-209ENST00000538995 EIF5BO60841 1220 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms