RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM47CQ5HY64 1035 aa17■□□□□ 0.31
USP28-204ENST00000537642 NOC4LQ9BVI4 516 aaKnown RBP17■□□□□ 0.31
USP28-204ENST00000537642 TM6SF1Q9BZW5 370 aa17■□□□□ 0.31
USP28-204ENST00000537642 HIPK3Q9H422 1215 aa17■□□□□ 0.31
USP28-204ENST00000537642 BCAS3Q9H6U6 928 aa17■□□□□ 0.31
USP28-204ENST00000537642 LAMA2P24043 3122 aaKnown RBP17■□□□□ 0.31
USP28-204ENST00000537642 UMODL1Q5DID0 1318 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 CCDC196A0A1B0GTZ2 297 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 SPATA31C2B4DYI2 1134 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 HOXD8P13378 290 aaPredicted RBP16.99■□□□□ 0.31
USP28-204ENST00000537642 EVCP57679 992 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 TOB2Q14106 344 aaPredicted RBP16.99■□□□□ 0.31
USP28-204ENST00000537642 HSDL1Q3SXM5 330 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 PPP1R18Q6NYC8 613 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 XRRA1Q6P2D8 792 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 SPATA33Q96N06 139 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 RIC8AQ9NPQ8 531 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 BARHL2Q9NY43 387 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 PCDHA6Q9UN73 950 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 PCDHA8Q9Y5H6 950 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 CYP46A1Q9Y6A2 500 aa16.99■□□□□ 0.31
USP28-204ENST00000537642 hCG_1984214I3L0E3 225 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 FIBPO43427 364 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 ZNF286BP0CG31 522 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 CYP2C9P11712 490 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 CSF2RAP15509 400 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 PDIA3P30101 505 aaKnown RBP16.98■□□□□ 0.31
USP28-204ENST00000537642 CHMP4BP1P59074 171 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 PTPN11Q06124 597 aaPredicted RBP16.98■□□□□ 0.31
USP28-204ENST00000537642 PPIGQ13427 754 aaKnown RBP eCLIP16.98■□□□□ 0.31
USP28-204ENST00000537642 PFKFB3Q16875 520 aaPredicted RBP16.98■□□□□ 0.31
USP28-204ENST00000537642 GPR153Q6NV75 609 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 C16orf59Q7L2K0 433 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 TMEM199Q8N511 208 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 ZNF713Q8N859 430 aaPredicted RBP16.98■□□□□ 0.31
USP28-204ENST00000537642 UPF3BQ9BZI7 483 aaKnown RBP16.98■□□□□ 0.31
USP28-204ENST00000537642 MLXIPQ9HAP2 919 aa16.98■□□□□ 0.31
USP28-204ENST00000537642 SPDYE3A6NKU9 549 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 F2P00734 622 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 SUPT20HL2P0C7V6 817 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 PSEN2P49810 448 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 NTRK3Q16288 839 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 SESTD1Q86VW0 696 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.97■□□□□ 0.31
USP28-204ENST00000537642 WNT8AQ9H1J5 351 aa16.97■□□□□ 0.31
USP28-204ENST00000537642 TRIP12Q14669 1992 aaPredicted RBP16.97■□□□□ 0.31
USP28-204ENST00000537642 SMCO2A6NFE2 343 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 HAS3O00219 553 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 PRPF3O43395 683 aaKnown RBP16.96■□□□□ 0.31
USP28-204ENST00000537642 PPFIA4O75335 1185 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 SCG2P13521 617 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 ITGB5P18084 799 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 ADCY7P51828 1080 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 CCL23P55773 120 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 CCT2P78371 535 aaKnown RBP16.96■□□□□ 0.31
USP28-204ENST00000537642 NEDD9Q14511 834 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 MFSD10Q14728 455 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 PKN1Q16512 942 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 TMEM240Q5SV17 173 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 CYFIP1Q7L576 1253 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 NLRX1Q86UT6 975 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 TEX2Q8IWB9 1127 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 PHKBQ93100 1093 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 PGBD1Q96JS3 809 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 RNPC3Q96LT9 517 aaKnown RBP16.96■□□□□ 0.31
USP28-204ENST00000537642 CTAGE1Q96RT6 745 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 SENP7Q9BQF6 1050 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 NCOA5Q9HCD5 579 aaKnown RBP16.96■□□□□ 0.31
USP28-204ENST00000537642 TELO2Q9Y4R8 837 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 UBIAD1Q9Y5Z9 338 aa16.96■□□□□ 0.31
USP28-204ENST00000537642 ACRP10323 421 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 CLK2P49760 499 aaKnown RBP16.95■□□□□ 0.3
USP28-204ENST00000537642 KIAA0753Q2KHM9 967 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 GDF6Q6KF10 455 aaPredicted RBP16.95■□□□□ 0.3
USP28-204ENST00000537642 METTL7BQ6UX53 244 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 GPRASP2Q96D09 838 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 LARP6Q9BRS8 491 aaKnown RBP16.95■□□□□ 0.3
USP28-204ENST00000537642 C16orf70Q9BSU1 422 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 ALG1Q9BT22 464 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 KATNAL1Q9BW62 490 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 EHMT1Q9H9B1 1298 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 IL23AQ9NPF7 189 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 HDAC6Q9UBN7 1215 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 SCN5AQ14524 2016 aa16.95■□□□□ 0.3
USP28-204ENST00000537642 ATP9AO75110 1047 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 PPFIA3O75145 1194 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 FOSP01100 380 aaPredicted RBP16.94■□□□□ 0.3
USP28-204ENST00000537642 IFNAR1P17181 557 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 PTGISQ16647 500 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 ZNF365Q70YC5 407 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 Q7L0L9 218 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 VWCEQ96DN2 955 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 ZNF274Q96GC6 653 aaPredicted RBP16.94■□□□□ 0.3
USP28-204ENST00000537642 SCLYQ96I15 445 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 GPR20Q99678 358 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 RNF26Q9BY78 433 aaPredicted RBP16.94■□□□□ 0.3
USP28-204ENST00000537642 PDRG1Q9NUG6 133 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 TMEM260Q9NX78 707 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 GTF2IRD1Q9UHL9 959 aa16.94■□□□□ 0.3
USP28-204ENST00000537642 TANC1Q9C0D5 1861 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms