RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 AXDND1Q5T1B0 1012 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 RNF207Q6ZRF8 634 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 FBXO16Q8IX29 292 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 C7orf61Q8IZ16 206 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 FMR1NBQ8N0W7 255 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 SRBD1Q8N5C6 995 aaKnown RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 ABHD16BQ9H3Z7 469 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 PDGFCQ9NRA1 345 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 MRVI1Q9Y6F6 885 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 A0A1B0GVL5 298 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 MARCKSP29966 332 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 KIF5BP33176 963 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 VPS54Q9P1Q0 977 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 FAM184BQ9ULE4 1060 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 ZMYND8Q9ULU4 1186 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 MYADML2A6NDP7 307 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 PPP6R2O75170 966 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 SYN1P17600 705 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 ADCYAP1R1P41586 468 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 NDUFA8P51970 172 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 NR5A1Q13285 461 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 SASS6Q6UVJ0 657 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 FBXO11Q86XK2 927 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 ARRDC4Q8NCT1 418 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 OXER1Q8TDS5 423 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 PIGSQ96S52 555 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 PHF20Q9BVI0 1012 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 MCM3APO60318 1980 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 ASB14A6NK59 587 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 OPLAHO14841 1288 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 ADAMTS4O75173 837 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 CMA1P23946 247 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 TOB1P50616 345 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-208ENST00000537004 ALDH5A1P51649 535 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-208ENST00000537004 RILPL1Q5EBL4 403 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 MTMR8Q96EF0 704 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 COL20A1Q9P218 1284 aa13.56□□□□□ -0.24
CLIP1-208ENST00000537004 COLQQ9Y215 455 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-208ENST00000537004 SYNRGQ9UMZ2 1314 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 KBTBD13C9JR72 458 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 ZBTB5O15062 677 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 ANO6Q4KMQ2 910 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 CHRDL2Q6WN34 429 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 FAM200AQ8TCP9 573 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 RIOX1Q9H6W3 641 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.55□□□□□ -0.24
CLIP1-208ENST00000537004 NR2E3Q9Y5X4 410 aa13.55□□□□□ -0.24
CLIP1-208ENST00000537004 SCG2P13521 617 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 TAPT1Q6NXT6 567 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 AMNQ9BXJ7 453 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 USP25Q9UHP3 1055 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 PCDHA1Q9Y5I3 950 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 DUSP11O75319 330 aaKnown RBP13.54□□□□□ -0.24
CLIP1-208ENST00000537004 CFBP00751 764 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 C6orf222P0C671 652 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-208ENST00000537004 PFKFB1P16118 471 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 KRT2P35908 639 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 RNF180Q86T96 592 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 SYTL5Q8TDW5 730 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-208ENST00000537004 TAAR1Q96RJ0 339 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 ADD3Q9UEY8 706 aaKnown RBP13.54□□□□□ -0.24
CLIP1-208ENST00000537004 PNMA2Q9UL42 364 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 ABCB11O95342 1321 aa13.54□□□□□ -0.24
CLIP1-208ENST00000537004 SMPD1P17405 629 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 BEX3Q00994 111 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 TNFAIP2Q03169 654 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 KCNA10Q16322 511 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 PFKFB3Q16875 520 aaPredicted RBP13.53□□□□□ -0.24
CLIP1-208ENST00000537004 MORC4Q8TE76 937 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 SDF4Q9BRK5 362 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 BRMS1Q9HCU9 246 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 FRMPD3Q5JV73 1810 aa13.53□□□□□ -0.24
CLIP1-208ENST00000537004 CUTAO60888 179 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 ZNF202O95125 648 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 HOXA13P31271 388 aaPredicted RBP13.52□□□□□ -0.24
CLIP1-208ENST00000537004 GNAQP50148 359 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 NPY5RQ15761 445 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 SLC39A5Q6ZMH5 540 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 KLHDC9Q8NEP7 349 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 GNEQ9Y223 722 aaKnown RBP13.52□□□□□ -0.24
CLIP1-208ENST00000537004 ATP11BQ9Y2G3 1177 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 MRPL11Q9Y3B7 192 aaKnown RBP13.52□□□□□ -0.24
CLIP1-208ENST00000537004 LCTP09848 1927 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 ALPK3Q96L96 1907 aa13.52□□□□□ -0.24
CLIP1-208ENST00000537004 A0A1W2PQ45 241 aaPredicted RBP13.52□□□□□ -0.25
CLIP1-208ENST00000537004 A0A1W2PQY0 241 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 FAM205CA6NFA0 338 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 GNASQ5JWF2 1037 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 RESP18Q5W5W9 173 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 CCSAPQ6IQ19 270 aaPredicted RBP13.52□□□□□ -0.25
CLIP1-208ENST00000537004 SHC4Q6S5L8 630 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 KRI1Q8N9T8 703 aaKnown RBP13.52□□□□□ -0.25
CLIP1-208ENST00000537004 CLIC6Q96NY7 704 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 DNAJC25Q9H1X3 360 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 PHF24Q9UPV7 400 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 PCDHB6Q9Y5E3 794 aa13.52□□□□□ -0.25
CLIP1-208ENST00000537004 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-208ENST00000537004 PNMA6FA0A0J9YX94 578 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ESPNB1AK53 854 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 DYNC1LI2O43237 492 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms