RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 LETM2Q2VYF4 491 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 ANKRD20A8PQ5CZ79 823 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 GDAP1Q8TB36 358 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 SYMPKQ92797 1274 aaKnown RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 KCNG1Q9UIX4 513 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 ZBED6P86452 979 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 PDE4BQ07343 736 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CAVIN4Q5BKX8 364 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 KBTBD3Q8NAB2 608 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 U2AF1L4Q8WU68 220 aaKnown RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 NSMCE1Q8WV22 266 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 TXLNGQ9NUQ3 528 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 TBC1D7Q9P0N9 293 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 TMCO1Q9UM00 188 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 ABCB11O95342 1321 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 RNASELQ05823 741 aaKnown RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CDCA2Q69YH5 1023 aaPredicted RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 C6orf89Q6UWU4 347 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 UBL4BQ8N7F7 174 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 MAGEB6Q8N7X4 407 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 MKL1Q969V6 931 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 EAF2Q96CJ1 260 aaPredicted RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 NHEJ1Q9H9Q4 299 aaPredicted RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 VPS54Q9P1Q0 977 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 NFAT5O94916 1531 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 TRIM37O94972 964 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 SKIP12755 728 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 PSMC4P43686 418 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 EXOSC10Q01780 885 aaKnown RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 ZNF268Q14587 947 aaPredicted RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 ZNF449Q6P9G9 518 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CAPN12Q6ZSI9 719 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 ZBTB10Q96DT7 871 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CHMP6Q96FZ7 201 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 MMS19Q96T76 1030 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CSRNP2Q9H175 543 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 TAF1DQ9H5J8 278 aaPredicted RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 INTUQ9ULD6 942 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 GMEB1Q9Y692 573 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CALM1P0DP23 149 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CALM2P0DP24 149 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CALM3P0DP25 149 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 SCTRP47872 440 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 SYCE1Q8N0S2 351 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 SH2D3CQ8N5H7 860 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 NOA1Q8NC60 698 aaKnown RBP5.88□□□□□ -1.47
PTPRD-213ENST00000537002 DNAJC7Q99615 494 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 SNX12Q9UMY4 172 aa5.88□□□□□ -1.47
PTPRD-213ENST00000537002 CCT8L1PA6NM43 557 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TROVE2P10155 538 aaKnown RBP eCLIP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TNNI2P48788 182 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 HDLBPQ00341 1268 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 C10orf76Q5T2E6 689 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 FAM81AQ8TBF8 368 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 GRAMD1AQ96CP6 724 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TSPYL2Q9H2G4 693 aaPredicted RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ARMT1Q9H993 441 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 A0A1W2PQJ5 194 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ATP2A2P16615 1042 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TPD52P55327 224 aaPredicted RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 SPATA21Q7Z572 469 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 DYDC2Q96IM9 177 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 OLFM3Q96PB7 478 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TUBB6Q9BUF5 446 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 FOXP1Q9H334 677 aaPredicted RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 SLC4A7Q9Y6M7 1214 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PALLDQ8WX93 1383 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 BTBD18B2RXH4 712 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 MAP3K7O43318 606 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PRR29P0C7W0 189 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PBX1P40424 430 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 MSH2P43246 934 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PSMD6Q15008 389 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ARHGAP22Q7Z5H3 698 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 IQCKQ8N0W5 287 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 CFAP57Q96MR6 1250 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 C6orf50Q9HD87 102 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 DDX20Q9UHI6 824 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 STX8Q9UNK0 236 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 COL15A1P39059 1388 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TRAPPC3O43617 180 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 NCK2O43639 380 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 DIAPH2O60879 1101 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 SKAP2O75563 359 aaPredicted RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PRDM1O75626 825 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 MMEP08473 750 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PPP2R2AP63151 447 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ZC3H18Q86VM9 953 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 FGD4Q96M96 766 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 COPRSQ9NQ92 184 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 STOML1Q9UBI4 398 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PREX1Q8TCU6 1659 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 GPAA1O43292 621 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ATP1A1P05023 1023 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 CYP21A2P08686 494 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 HSPA9P38646 679 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 BYSLQ13895 437 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 CWF19L1Q69YN2 538 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms