RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 CSF2RAP15509 400 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 ADD1P35611 737 aaKnown RBP20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 SEMA3FQ13275 785 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 DGKDQ16760 1214 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 UBE2SQ16763 222 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 CELF3Q5SZQ8 465 aaKnown RBP20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 PCNX4Q63HM2 1172 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 PPTC7Q8NI37 304 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 RTEL1Q9NZ71 1219 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 NAP1L2Q9ULW6 460 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 V9GY48 417 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 CDH23Q9H251 3354 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 NID2Q14112 1375 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 MYO9BQ13459 2157 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 SORBS3O60504 671 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 HOXD8P13378 290 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 ICAM3P32942 547 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 METAP2P50579 478 aaKnown RBP eCLIP20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 HSDL1Q3SXM5 330 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 FAM47CQ5HY64 1035 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 C16orf59Q7L2K0 433 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 BCAS3Q9H6U6 928 aa20.53■□□□□ 0.88
TNFRSF1A-209ENST00000536717 CYP2C9P11712 490 aa20.52■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PPIGQ13427 754 aaKnown RBP eCLIP20.52■□□□□ 0.873e-8■■□□□ 13.4
TNFRSF1A-209ENST00000536717 GNPTABQ3T906 1256 aa20.52■□□□□ 0.87
TNFRSF1A-209ENST00000536717 TMEM199Q8N511 208 aa20.52■□□□□ 0.87
TNFRSF1A-209ENST00000536717 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.52■□□□□ 0.878e-9■■■□□ 16.8
TNFRSF1A-209ENST00000536717 WNT8AQ9H1J5 351 aa20.52■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SUPT20HL2P0C7V6 817 aa20.51■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PTPN11Q06124 597 aaPredicted RBP20.51■□□□□ 0.87
TNFRSF1A-209ENST00000536717 RNPC3Q96LT9 517 aaKnown RBP20.51■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SPATA33Q96N06 139 aa20.51■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ZSWIM6Q9HCJ5 1215 aa20.51■□□□□ 0.87
TNFRSF1A-209ENST00000536717 GBF1Q92538 1859 aa20.51■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SPATA31C2B4DYI2 1134 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 STXBP3O00186 592 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 F2P00734 622 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ZNF286BP0CG31 522 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 NAPAP54920 295 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 CCL23P55773 120 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 CHMP4BP1P59074 171 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 TMEM240Q5SV17 173 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 XRRA1Q6P2D8 792 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 RUFY3Q7L099 469 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 Q7L0L9 218 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SESTD1Q86VW0 696 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 TM6SF1Q9BZW5 370 aa20.5■□□□□ 0.87
TNFRSF1A-209ENST00000536717 CCDC196A0A1B0GTZ2 297 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 hCG_1984214I3L0E3 225 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 FIBPO43427 364 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PPFIA4O75335 1185 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ACRP10323 421 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 RBM25P49756 843 aaKnown RBP20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 EVCP57679 992 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PPP1R18Q6NYC8 613 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ZNF713Q8N859 430 aaPredicted RBP20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 CTAGE1Q96RT6 745 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 MLXIPQ9HAP2 919 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 RIC8AQ9NPQ8 531 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 BARHL2Q9NY43 387 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PCDHA6Q9UN73 950 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PCDHA8Q9Y5H6 950 aa20.49■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SPDYE3A6NKU9 549 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 HAS3O00219 553 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PSEN2P49810 448 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 TOB2Q14106 344 aaPredicted RBP20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 DEFB123Q8N688 67 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 VWCEQ96DN2 955 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 IL23AQ9NPF7 189 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 CYP46A1Q9Y6A2 500 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 NEDD9Q14511 834 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 MFSD10Q14728 455 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 NTRK3Q16288 839 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PFKFB3Q16875 520 aaPredicted RBP20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 KIAA0753Q2KHM9 967 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 GDF6Q6KF10 455 aaPredicted RBP20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 METTL7BQ6UX53 244 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ZNF365Q70YC5 407 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 CYFIP1Q7L576 1253 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 IL17RAQ96F46 866 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SCLYQ96I15 445 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 C16orf70Q9BSU1 422 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 KATNAL1Q9BW62 490 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 GTF2IRD1Q9UHL9 959 aa20.48■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ITGB5P18084 799 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PDIA3P30101 505 aaKnown RBP20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 RASIP1Q5U651 963 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 PSRC1Q6PGN9 363 aaPredicted RBP20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 GPRASP2Q96D09 838 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 TBC1D32Q96NH3 1257 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SENP7Q9BQF6 1050 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ALG1Q9BT22 464 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 UPF3BQ9BZI7 483 aaKnown RBP20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 HDAC6Q9UBN7 1215 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 TELO2Q9Y4R8 837 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 UBIAD1Q9Y5Z9 338 aa20.47■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SMCO2A6NFE2 343 aa20.46■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SCG2P13521 617 aa20.46■□□□□ 0.87
TNFRSF1A-209ENST00000536717 ADCY7P51828 1080 aa20.46■□□□□ 0.87
TNFRSF1A-209ENST00000536717 SMAD3P84022 425 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms