RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	7.35	□□□□□ -1.23
PRKDC-208	ENST00000536710	B4GALT6	Q9UBX8	382 aa		7.35	□□□□□ -1.23
PRKDC-208	ENST00000536710	APOBEC2	Q9Y235	224 aa	Known RBP	7.35	□□□□□ -1.23
PRKDC-208	ENST00000536710	PPP1R11	O60927	126 aa	Predicted RBP	7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	KPNA1	P52294	538 aa	Predicted RBP	7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	OCRL	Q01968	901 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	IQSEC1	Q6DN90	963 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	GALNT18	Q6P9A2	607 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	NECAB2	Q7Z6G3	386 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	SPPL2C	Q8IUH8	684 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	CHTF18	Q8WVB6	975 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	SMAD5	Q99717	465 aa	Known RBP	7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	EPB41L1	Q9H4G0	881 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	CCDC39	Q9UFE4	941 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	ADGRE2	Q9UHX3	823 aa		7.34	□□□□□ -1.23
PRKDC-208	ENST00000536710	PHLDB1	Q86UU1	1377 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	KCNK3	O14649	394 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	ATP2A2	P16615	1042 aa	Known RBP	7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	PRKCA	P17252	672 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	JAM2	P57087	298 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	CHRNE	Q04844	493 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	ARHGAP44	Q17R89	818 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	ATP13A4	Q4VNC1	1196 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	ARHGAP36	Q6ZRI8	547 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	PIP4K2C	Q8TBX8	421 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	COG1	Q8WTW3	980 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	CCDC120	Q96HB5	630 aa		7.33	□□□□□ -1.24
PRKDC-208	ENST00000536710	SLC12A8	A0AV02	714 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	MED26	O95402	600 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	PRNP	P04156	253 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	LSS	P48449	732 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	MECP2	P51608	486 aa	Known RBP	7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	CORO7	P57737	925 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	MVK	Q03426	396 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	MTMR1	Q13613	665 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	GPR19	Q15760	415 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	MROH9	Q5TGP6	573 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	BICRAL	Q6AI39	1079 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	CABP7	Q86V35	215 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	PTRH1	Q86Y79	214 aa	Known RBP	7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	PDZD8	Q8NEN9	1154 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	NLGN2	Q8NFZ4	835 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	PLEKHO2	Q8TD55	490 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	MTA3	Q9BTC8	594 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	PDLIM7	Q9NR12	457 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	SPTLC3	Q9NUV7	552 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710		X6R8D5	127 aa		7.32	□□□□□ -1.24
PRKDC-208	ENST00000536710	FITM1	A5D6W6	292 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710		H7C1D1	291 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	KRIT1	O00522	736 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	NKRF	O15226	690 aa	Known RBP eCLIP	7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	ALDH1L1	O75891	902 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	PARN	O95453	639 aa	Known RBP	7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	NTRK1	P04629	796 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	MSL3P1	P0C860	447 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	LACTB	P83111	547 aa	Predicted RBP	7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	KIR3DS1	Q14943	382 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	PLCL1	Q15111	1095 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	SLC23A3	Q6PIS1	610 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	OTOP3	Q7RTS5	596 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	TP53INP2	Q8IXH6	220 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710		Q8N1Y9	231 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	CNTD1	Q8N815	330 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	ASIC4	Q96FT7	647 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	PLCD4	Q9BRC7	762 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	BOC	Q9BWV1	1114 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	PUS7L	Q9H0K6	701 aa	Known RBP	7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	CCDC8	Q9H0W5	538 aa	Predicted RBP	7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	EMC7	Q9NPA0	242 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	CRTAC1	Q9NQ79	661 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	OXSM	Q9NWU1	459 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	H2AFY2	Q9P0M6	372 aa	Predicted RBP	7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	GPR160	Q9UJ42	338 aa		7.31	□□□□□ -1.24
PRKDC-208	ENST00000536710	ZNF561-AS1	K7EIQ3	104 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	NRDC	O43847	1150 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	FUT4	P22083	530 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	CYP4F8	P98187	520 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	IRF9	Q00978	393 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	ZNF174	Q15697	407 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	DTX1	Q86Y01	620 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	WFDC3	Q8IUB2	231 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	C19orf44	Q9H6X5	657 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	SMURF1	Q9HCE7	757 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	FBLN5	Q9UBX5	448 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	TCEAL9	Q9UHQ7	104 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	DSE	Q9UL01	958 aa		7.3	□□□□□ -1.24
PRKDC-208	ENST00000536710	SCD	O00767	359 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	HIP1R	O75146	1068 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	ULK1	O75385	1050 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	AMY2A	P04746	511 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	RAC2	P15153	192 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	AMY2B	P19961	511 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	TRHR	P34981	398 aa	Predicted RBP	7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	CD97	P48960	835 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	ERVFC1	P60507	584 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	STEAP3	Q658P3	488 aa		7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	NOL8	Q76FK4	1167 aa	Known RBP	7.29	□□□□□ -1.24
PRKDC-208	ENST00000536710	RIOX2	Q8IUF8	465 aa		7.29	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms