RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 PCNX4Q63HM2 1172 aa19.81■□□□□ 0.76
PHRF1-204ENST00000532550 PSRC1Q6PGN9 363 aaPredicted RBP19.81■□□□□ 0.76
PHRF1-204ENST00000532550 ZNF365Q70YC5 407 aa19.81■□□□□ 0.76
PHRF1-204ENST00000532550 RPUSD2Q8IZ73 545 aaKnown RBP19.81■□□□□ 0.76
PHRF1-204ENST00000532550 KAT2BQ92831 832 aa19.81■□□□□ 0.76
PHRF1-204ENST00000532550 KATNAL1Q9BW62 490 aa19.81■□□□□ 0.76
PHRF1-204ENST00000532550 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-204ENST00000532550 CCDC196A0A1B0GTZ2 297 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-204ENST00000532550 SPDYE3A6NKU9 549 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 SPATA31C2B4DYI2 1134 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 FGBP02675 491 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 UBA1P22314 1058 aaKnown RBP19.8■□□□□ 0.76
PHRF1-204ENST00000532550 ICAM3P32942 547 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 APOBRQ0VD83 1088 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 NEDD9Q14511 834 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 PTGISQ16647 500 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 NLRX1Q86UT6 975 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 C7orf31Q8N865 590 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 RETREG2Q8NC44 543 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 GPKOWQ92917 476 aaPredicted RBP eCLIP19.8■□□□□ 0.76
PHRF1-204ENST00000532550 BRF1Q92994 677 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 INPP4AQ96PE3 977 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-204ENST00000532550 MTMR10Q9NXD2 777 aa19.8■□□□□ 0.76
PHRF1-204ENST00000532550 CNTNAP5Q8WYK1 1306 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 FIBPO43427 364 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 RPS6KB1P23443 525 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 PSEN2P49810 448 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 METAP2P50579 478 aaKnown RBP eCLIP19.79■□□□□ 0.76
PHRF1-204ENST00000532550 NAPAP54920 295 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 HSDL1Q3SXM5 330 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 ZNF697Q5TEC3 545 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 SCLYQ96I15 445 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 ALG1Q9BT22 464 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 WNT8AQ9H1J5 351 aa19.79■□□□□ 0.76
PHRF1-204ENST00000532550 NOP56O00567 594 aaKnown RBP19.78■□□□□ 0.76
PHRF1-204ENST00000532550 CDC27P30260 824 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 ADD1P35611 737 aaKnown RBP19.78■□□□□ 0.76
PHRF1-204ENST00000532550 FUT2Q10981 343 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 BFSP2Q13515 415 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 MFSD10Q14728 455 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 UBE2SQ16763 222 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 KIAA0753Q2KHM9 967 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 WWC2Q6AWC2 1192 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 SESTD1Q86VW0 696 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 FBXL16Q8N461 479 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 MTIF3Q9H2K0 278 aaKnown RBP19.78■□□□□ 0.76
PHRF1-204ENST00000532550 EHMT1Q9H9B1 1298 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 FAM217BQ9NTX9 383 aaPredicted RBP19.78■□□□□ 0.76
PHRF1-204ENST00000532550 PCDHA6Q9UN73 950 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 PCDHA8Q9Y5H6 950 aa19.78■□□□□ 0.76
PHRF1-204ENST00000532550 LAMA2P24043 3122 aaKnown RBP19.78■□□□□ 0.76
PHRF1-204ENST00000532550 hCG_1984214I3L0E3 225 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 ZNF286BP0CG31 522 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 HOXD8P13378 290 aaPredicted RBP19.77■□□□□ 0.76
PHRF1-204ENST00000532550 CYFIP1Q7L576 1253 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 CCDC155Q8N6L0 562 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 ZNF713Q8N859 430 aaPredicted RBP19.77■□□□□ 0.76
PHRF1-204ENST00000532550 FAM161BQ96MY7 647 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 USP26Q9BXU7 913 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 HDAC6Q9UBN7 1215 aa19.77■□□□□ 0.76
PHRF1-204ENST00000532550 HAS3O00219 553 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 PITPNM1O00562 1244 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 F2P00734 622 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 GDF6Q6KF10 455 aaPredicted RBP19.76■□□□□ 0.75
PHRF1-204ENST00000532550 PPP1R18Q6NYC8 613 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 METTL7BQ6UX53 244 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 TEX2Q8IWB9 1127 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 GIMAP8Q8ND71 665 aaPredicted RBP19.76■□□□□ 0.75
PHRF1-204ENST00000532550 HERVK_113Q902F9 699 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 CDHR1Q96JP9 859 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 SENP7Q9BQF6 1050 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 GLT8D2Q9H1C3 349 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 SEMA6BQ9H3T3 888 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 BCAS3Q9H6U6 928 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 RIC8AQ9NPQ8 531 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 GTF2IRD1Q9UHL9 959 aa19.76■□□□□ 0.75
PHRF1-204ENST00000532550 TRIP12Q14669 1992 aaPredicted RBP19.75■□□□□ 0.75
PHRF1-204ENST00000532550 SMCO2A6NFE2 343 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 FOSP01100 380 aaPredicted RBP19.75■□□□□ 0.75
PHRF1-204ENST00000532550 PFKMP08237 780 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 SEMA3FQ13275 785 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 RASIP1Q5U651 963 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 RUFY3Q7L099 469 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 OTOP2Q7RTS6 562 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 GPRASP2Q96D09 838 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 C16orf70Q9BSU1 422 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 AGXT2Q9BYV1 514 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 BARHL2Q9NY43 387 aa19.75■□□□□ 0.75
PHRF1-204ENST00000532550 H3BRB1 525 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 STXBP3O00186 592 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 MAFGO15525 162 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 IQCF3P0C7M6 154 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 RFC2P35250 354 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 ADCY7P51828 1080 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 TYW1BQ6NUM6 668 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 DEFB128Q7Z7B8 93 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 CAGE1Q8TC20 777 aa19.74■□□□□ 0.75
PHRF1-204ENST00000532550 TUT1Q9H6E5 874 aaKnown RBP19.74■□□□□ 0.75
PHRF1-204ENST00000532550 ZSWIM6Q9HCJ5 1215 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms