RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CYTH3O43739 400 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 DDAH1O94760 285 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 F2P00734 622 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 CA3P07451 260 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 MCM5P33992 734 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 GNAQP50148 359 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 ADGRE1Q14246 886 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 HERC6Q8IVU3 1022 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 MB21D2Q8IYB1 491 aaPredicted RBP17.02■□□□□ 0.32
VPS28-215ENST00000531924 ZNF654Q8IZM8 581 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 TMTC2Q8N394 836 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 IL31RAQ8NI17 732 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 IGDCC4Q8TDY8 1250 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 ZFP91Q96JP5 570 aaPredicted RBP17.02■□□□□ 0.32
VPS28-215ENST00000531924 LZTS2Q9BRK4 669 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 GTPBP6O43824 516 aaPredicted RBP17.01■□□□□ 0.31
VPS28-215ENST00000531924 TLL1O43897 1013 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 STAM2O75886 525 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 CKBP12277 381 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 UBA1P22314 1058 aaKnown RBP17.01■□□□□ 0.31
VPS28-215ENST00000531924 PTK7Q13308 1070 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 SLC35G1Q2M3R5 365 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 HSDL1Q3SXM5 330 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 MAP3K14Q99558 947 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 THEGQ9P2T0 379 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 CHD9Q3L8U1 2897 aa17.01■□□□□ 0.31
VPS28-215ENST00000531924 RGS20O76081 388 aa17■□□□□ 0.31
VPS28-215ENST00000531924 ANTXR2P58335 489 aa17■□□□□ 0.31
VPS28-215ENST00000531924 NEDD9Q14511 834 aa17■□□□□ 0.31
VPS28-215ENST00000531924 SKIV2LQ15477 1246 aaKnown RBP17■□□□□ 0.31
VPS28-215ENST00000531924 CNKSR3Q6P9H4 555 aa17■□□□□ 0.31
VPS28-215ENST00000531924 ATXN2LQ8WWM7 1075 aaKnown RBP17■□□□□ 0.31
VPS28-215ENST00000531924 TMEM87BQ96K49 555 aa17■□□□□ 0.31
VPS28-215ENST00000531924 MYL10Q9BUA6 226 aa17■□□□□ 0.31
VPS28-215ENST00000531924 SPZ1Q9BXG8 430 aa17■□□□□ 0.31
VPS28-215ENST00000531924 CERS4Q9HA82 394 aa17■□□□□ 0.31
VPS28-215ENST00000531924 LY9Q9HBG7 655 aa17■□□□□ 0.31
VPS28-215ENST00000531924 PRDM6Q9NQX0 595 aa17■□□□□ 0.31
VPS28-215ENST00000531924 MYH6P13533 1939 aa17■□□□□ 0.31
VPS28-215ENST00000531924 HAS3O00219 553 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 CALM1P0DP23 149 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 CALM2P0DP24 149 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 CALM3P0DP25 149 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 SP2Q02086 613 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 IKBKEQ14164 716 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 ARNTL2Q8WYA1 636 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 DHX38Q92620 1227 aaKnown RBP16.99■□□□□ 0.31
VPS28-215ENST00000531924 MTA3Q9BTC8 594 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 ANO2Q9NQ90 1003 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 RTEL1Q9NZ71 1219 aa16.99■□□□□ 0.31
VPS28-215ENST00000531924 ABHD14A-ACY1A0A1B0GW23 586 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 C17orf102A2RUQ5 167 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 H3BRB1 525 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 FIBPO43427 364 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 EFCAB14O75071 495 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 HOXD8P13378 290 aaPredicted RBP16.98■□□□□ 0.31
VPS28-215ENST00000531924 SMARCA1P28370 1054 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 THPOP40225 353 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 MRPS5P82675 430 aaKnown RBP16.98■□□□□ 0.31
VPS28-215ENST00000531924 RBL2Q08999 1139 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 SYNE3Q6ZMZ3 975 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 NLRX1Q86UT6 975 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 GPKOWQ92917 476 aaPredicted RBP eCLIP16.98■□□□□ 0.31
VPS28-215ENST00000531924 ATP6V0A1Q93050 837 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 CTAGE1Q96RT6 745 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 TUT1Q9H6E5 874 aaKnown RBP16.98■□□□□ 0.31
VPS28-215ENST00000531924 SLC12A7Q9Y666 1083 aa16.98■□□□□ 0.31
VPS28-215ENST00000531924 EMSYQ7Z589 1322 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 SPATA31C2B4DYI2 1134 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 SLC27A2O14975 620 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 GNAT1P11488 350 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 WDR5P61964 334 aaKnown RBP16.97■□□□□ 0.31
VPS28-215ENST00000531924 ZNF200P98182 395 aaPredicted RBP16.97■□□□□ 0.31
VPS28-215ENST00000531924 ZNF618Q5T7W0 954 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 RNF20Q5VTR2 975 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 XRRA1Q6P2D8 792 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 USP17L6PQ6QN14 398 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 METTL7BQ6UX53 244 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 CYFIP1Q7L576 1253 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 ASB2Q96Q27 587 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 ESYT1Q9BSJ8 1104 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 USP26Q9BXU7 913 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 ZNF215Q9UL58 517 aaPredicted RBP16.97■□□□□ 0.31
VPS28-215ENST00000531924 KIAA1217Q5T5P2 1943 aa16.97■□□□□ 0.31
VPS28-215ENST00000531924 RSPH10B2B2RC85 870 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 RFXAPO00287 272 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 SH2B2O14492 632 aaPredicted RBP16.96■□□□□ 0.31
VPS28-215ENST00000531924 NBNO60934 754 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 CXCL10P02778 98 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 LGALS2P05162 132 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 RSPH10BP0C881 870 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 ICAM3P32942 547 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 MRPS9P82933 396 aaKnown RBP16.96■□□□□ 0.31
VPS28-215ENST00000531924 SP4Q02446 784 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 TAP1Q03518 808 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 CREB3L3Q68CJ9 461 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 GIMAP8Q8ND71 665 aaPredicted RBP16.96■□□□□ 0.31
VPS28-215ENST00000531924 INPP4AQ96PE3 977 aaPredicted RBP16.96■□□□□ 0.31
VPS28-215ENST00000531924 C16orf70Q9BSU1 422 aa16.96■□□□□ 0.31
VPS28-215ENST00000531924 LSG1Q9H089 658 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms