RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 RRAGBQ5VZM2 374 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 MCTP2Q6DN12 878 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 MTERF4Q7Z6M4 381 aaKnown RBP13.21□□□□□ -0.29
USF1-208ENST00000528768 NEK8Q86SG6 692 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 ZSCAN29Q8IWY8 852 aaPredicted RBP13.21□□□□□ -0.29
USF1-208ENST00000528768 MYRIPQ8NFW9 859 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 RAB34Q9BZG1 259 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 CCSER1Q9C0I3 900 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 FANCLQ9NW38 375 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 NFE2L3Q9Y4A8 694 aa13.21□□□□□ -0.29
USF1-208ENST00000528768 DOCK1Q14185 1865 aa13.21□□□□□ -0.3
USF1-208ENST00000528768 IGKV6D-41A0A0C4DH26 115 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 TNFRSF10AO00220 468 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 MPHOSPH10O00566 681 aaKnown RBP13.2□□□□□ -0.3
USF1-208ENST00000528768 CYTH3O43739 400 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 OR52Z1P0C646 297 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 PDHBP11177 359 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 SMAD3P84022 425 aaKnown RBP13.2□□□□□ -0.3
USF1-208ENST00000528768 AMPD3Q01432 767 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 TRIM32Q13049 653 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 INF2Q27J81 1249 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 TMEM266Q2M3C6 531 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 TJAP1Q5JTD0 557 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 TREML2Q5T2D2 321 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 USP17L2Q6R6M4 530 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 USP49Q70CQ1 688 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 HOMER1Q86YM7 354 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 VSTM4Q8IW00 320 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 REXO1Q8N1G1 1221 aaKnown RBP13.2□□□□□ -0.3
USF1-208ENST00000528768 MAP7D2Q96T17 732 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 VAT1LQ9HCJ6 419 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 PI4KBQ9UBF8 816 aa13.2□□□□□ -0.3
USF1-208ENST00000528768 SYNRGQ9UMZ2 1314 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 CDK5RAP2Q96SN8 1893 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 FOCADQ5VW36 1801 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 PNMA6FA0A0J9YX94 578 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 USP17L5A8MUK1 530 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 MSCO60682 206 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 TPM1P09493 284 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 SNHG28P0DPA3 235 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 TNNT1P13805 278 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 AKR1B1P15121 316 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 MAPK4P31152 587 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 MRPL12P52815 198 aaKnown RBP13.19□□□□□ -0.3
USF1-208ENST00000528768 PTPN14Q15678 1187 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 C17orf53Q8N3J3 647 aaPredicted RBP13.19□□□□□ -0.3
USF1-208ENST00000528768 C4orf32Q8N8J7 132 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 ZNF280CQ8ND82 737 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 GTF3C2Q8WUA4 911 aaPredicted RBP13.19□□□□□ -0.3
USF1-208ENST00000528768 PIGSQ96S52 555 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 LRRC27Q9C0I9 530 aa13.19□□□□□ -0.3
USF1-208ENST00000528768 ASCC2Q9H1I8 757 aaPredicted RBP13.19□□□□□ -0.3
USF1-208ENST00000528768 PHIPQ8WWQ0 1821 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 FOSL2P15408 326 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 CYP2B6P20813 491 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 RGS2P41220 211 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 CCZ1BP86790 482 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 CCZ1P86791 482 aaPredicted RBP13.18□□□□□ -0.3
USF1-208ENST00000528768 CACNB2Q08289 660 aaPredicted RBP13.18□□□□□ -0.3
USF1-208ENST00000528768 ZNF543Q08ER8 600 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 TRAF1Q13077 416 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 E2F4Q16254 413 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 CCDC96Q2M329 555 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 SH3D19Q5HYK7 790 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 ZNF658Q5TYW1 1059 aaPredicted RBP13.18□□□□□ -0.3
USF1-208ENST00000528768 LHX8Q68G74 356 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 FCHSD1Q86WN1 690 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 ZFPM1Q8IX07 1006 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 GRAMD1CQ8IYS0 662 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 DCAF4Q8WV16 495 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 CALML4Q96GE6 196 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 KANSL2Q9H9L4 492 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 AS3MTQ9HBK9 375 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 DISC1Q9NRI5 854 aa13.18□□□□□ -0.3
USF1-208ENST00000528768 LOC285556D6RIA3 1793 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 ZSCAN12O43309 604 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 CCNT1O60563 726 aaKnown RBP13.17□□□□□ -0.3
USF1-208ENST00000528768 RPN1P04843 607 aaKnown RBP13.17□□□□□ -0.3
USF1-208ENST00000528768 ATP1A3P13637 1013 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 ZNF18P17022 549 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 BMP6P22004 513 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 PLA2G5P39877 138 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 IRX3P78415 501 aaPredicted RBP13.17□□□□□ -0.3
USF1-208ENST00000528768 SPP2Q13103 211 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 KCNB1Q14721 858 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 LETM2Q2VYF4 491 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 CERKLQ49MI3 558 aaPredicted RBP13.17□□□□□ -0.3
USF1-208ENST00000528768 PDXDC2PQ6P474 469 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 LRRC47Q8N1G4 583 aaKnown RBP13.17□□□□□ -0.3
USF1-208ENST00000528768 GPRC5AQ8NFJ5 357 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 RASGRP4Q8TDF6 673 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 GPCPD1Q9NPB8 672 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 DDX4Q9NQI0 724 aaKnown RBP13.17□□□□□ -0.3
USF1-208ENST00000528768 NYAP2Q9P242 653 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 RWDD2AQ9UIY3 292 aa13.17□□□□□ -0.3
USF1-208ENST00000528768 PRUNE2Q8WUY3 3088 aa13.16□□□□□ -0.3
USF1-208ENST00000528768 FRMPD2Q68DX3 1309 aaPredicted RBP13.16□□□□□ -0.3
USF1-208ENST00000528768 A0A087X0B3 334 aa13.16□□□□□ -0.3
USF1-208ENST00000528768 GOLGA6L9A6NEM1 432 aa13.16□□□□□ -0.3
USF1-208ENST00000528768 GCFC2P16383 781 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms