RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ST18O60284 1047 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 GH1P01241 217 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 MMP3P08254 477 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 SLC16A2P36021 539 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 RPS6P62753 249 aaKnown RBP12.29□□□□□ -0.44
CPSF1-203ENST00000527916 PTK7Q13308 1070 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 IMMTQ16891 758 aaKnown RBP12.29□□□□□ -0.44
CPSF1-203ENST00000527916 EPC2Q52LR7 807 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 TTBK2Q6IQ55 1244 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 IQCA1Q86XH1 822 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 MYOCDQ8IZQ8 938 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 DHX38Q92620 1227 aaKnown RBP12.29□□□□□ -0.44
CPSF1-203ENST00000527916 CTAGE1Q96RT6 745 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 PRRX2Q99811 253 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 KATNAL1Q9BW62 490 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 NSUN3Q9H649 340 aaKnown RBP12.29□□□□□ -0.44
CPSF1-203ENST00000527916 GTF2IRD1Q9UHL9 959 aa12.29□□□□□ -0.44
CPSF1-203ENST00000527916 SPTBN4Q9H254 2564 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 MICAL3Q7RTP6 2002 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 H3BNC9 293 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 LGR5O75473 907 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 GSPT1P15170 499 aaKnown RBP12.28□□□□□ -0.44
CPSF1-203ENST00000527916 PTPN5P54829 565 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 HTRA4P83105 476 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-203ENST00000527916 ZNF543Q08ER8 600 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 GPM6BQ13491 265 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 PKN1Q16512 942 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 DGKDQ16760 1214 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 TCEAL5Q5H9L2 206 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 GPATCH4Q5T3I0 446 aaKnown RBP12.28□□□□□ -0.44
CPSF1-203ENST00000527916 RUFY2Q8WXA3 655 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 CLEC4DQ8WXI8 215 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 YME1L1Q96TA2 773 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 KRT23Q9C075 422 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 MAF1Q9H063 256 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 CNNM2Q9H8M5 875 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 CLDND1Q9NY35 253 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 ZSWIM5Q9P217 1185 aa12.28□□□□□ -0.44
CPSF1-203ENST00000527916 KDM4AO75164 1064 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 ARIH2O95376 493 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 IRS1P35568 1242 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 COL19A1Q14993 1142 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 TCTN1Q2MV58 587 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 HERC4Q5GLZ8 1057 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-203ENST00000527916 ZNF618Q5T7W0 954 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 CCDC62Q6P9F0 684 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.27□□□□□ -0.451e-12■■■■□ 22
CPSF1-203ENST00000527916 RASGRP2Q7LDG7 609 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 CHST3Q7LGC8 479 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 SP7Q8TDD2 431 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-203ENST00000527916 KAT2BQ92831 832 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 HDAC6Q9UBN7 1215 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 TECTAO75443 2155 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 NEDD4P46934 1319 aa12.27□□□□□ -0.45
CPSF1-203ENST00000527916 CHMLP26374 656 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 PSEN2P49810 448 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 FOXK2Q01167 660 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 ARHGAP1Q07960 439 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 SEPT14Q6ZU15 432 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 DHX37Q8IY37 1157 aaKnown RBP12.26□□□□□ -0.45
CPSF1-203ENST00000527916 TMEM192Q8IY95 271 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 RGS22Q8NE09 1264 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 ZSCAN10Q96SZ4 725 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-203ENST00000527916 ALG1Q9BT22 464 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 GPCPD1Q9NPB8 672 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 MUTYHQ9UIF7 546 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 FRMPD2Q68DX3 1309 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-203ENST00000527916 WDR19Q8NEZ3 1342 aa12.26□□□□□ -0.45
CPSF1-203ENST00000527916 RSPH10B2B2RC85 870 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 B4E1Z4 1266 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 RSPH10BP0C881 870 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 IRX6P78412 446 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-203ENST00000527916 MBTPS1Q14703 1052 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 MFSD10Q14728 455 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 SMAD2Q15796 467 aaKnown RBP12.25□□□□□ -0.45
CPSF1-203ENST00000527916 LY6KQ17RY6 165 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 KIAA0753Q2KHM9 967 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 BMP8AQ7Z5Y6 402 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 RPAINQ86UA6 219 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 FBXO11Q86XK2 927 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 SUGP1Q8IWZ8 645 aaKnown RBP12.25□□□□□ -0.45
CPSF1-203ENST00000527916 PNMA1Q8ND90 353 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 DBF4BQ8NFT6 615 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 NSUN6Q8TEA1 469 aaKnown RBP12.25□□□□□ -0.45
CPSF1-203ENST00000527916 EDAQ92838 391 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 ZKSCAN3Q9BRR0 538 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 IL25Q9H293 177 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 KAT14Q9H8E8 782 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 MYH6P13533 1939 aa12.25□□□□□ -0.45
CPSF1-203ENST00000527916 RIF1Q5UIP0 2472 aaKnown RBP12.25□□□□□ -0.45
CPSF1-203ENST00000527916 F2P00734 622 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 THPOP40225 353 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 LAMC2Q13753 1193 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 STXBP2Q15833 593 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 TRIM71Q2Q1W2 868 aaKnown RBP12.24□□□□□ -0.45
CPSF1-203ENST00000527916 ASPRV1Q53RT3 343 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 PLEKHG4Q58EX7 1191 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 TRAF7Q6Q0C0 670 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 RNF135Q8IUD6 432 aa12.24□□□□□ -0.45
CPSF1-203ENST00000527916 ENAHQ8N8S7 591 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms