RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 hCG_1642624A0A1W2PR95 340 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 GOLGA8AA7E2F4 631 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 GOLGA8BA8MQT2 603 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 SPATA31C2B4DYI2 1134 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 hCG_1984214I3L0E3 225 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 HAS3O00219 553 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 PITPNM1O00562 1244 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 FIBPO43427 364 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 PPP1R18Q6NYC8 613 aa34.14■■■■□ 3.06
SYNPO-203ENST00000518872 ZNF713Q8N859 430 aaPredicted RBP34.14■■■■□ 3.06
SYNPO-203ENST00000518872 GPKOWQ92917 476 aaPredicted RBP eCLIP34.14■■■■□ 3.06
SYNPO-203ENST00000518872 TRIP12Q14669 1992 aaPredicted RBP34.13■■■■□ 3.05
SYNPO-203ENST00000518872 CYP2C9P11712 490 aa34.13■■■■□ 3.05
SYNPO-203ENST00000518872 PSMA5P28066 241 aa34.13■■■■□ 3.05
SYNPO-203ENST00000518872 HSDL1Q3SXM5 330 aa34.13■■■■□ 3.05
SYNPO-203ENST00000518872 SPATA33Q96N06 139 aa34.13■■■■□ 3.05
SYNPO-203ENST00000518872 DOCK5Q9H7D0 1870 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 HSFX4A0A1B0GTS1 333 aaPredicted RBP34.12■■■■□ 3.05
SYNPO-203ENST00000518872 HSFX3A0A1B0GWH4 333 aaPredicted RBP34.12■■■■□ 3.05
SYNPO-203ENST00000518872 CCL23P55773 120 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 FGD1P98174 961 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 SEMA3FQ13275 785 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 NEDD9Q14511 834 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 WWC2Q6AWC2 1192 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 Q6ZUG5 572 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 ZNF365Q70YC5 407 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 HEATR3Q7Z4Q2 680 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 ZFP91Q96JP5 570 aaPredicted RBP34.12■■■■□ 3.05
SYNPO-203ENST00000518872 SENP7Q9BQF6 1050 aa34.12■■■■□ 3.05
SYNPO-203ENST00000518872 TMEM265A0A087WTH1 108 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 CCDC196A0A1B0GTZ2 297 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 CPA1P15085 419 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 RPS6KB1P23443 525 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 CDC27P30260 824 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 PSEN2P49810 448 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 ZNF697Q5TEC3 545 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 RPUSD2Q8IZ73 545 aaKnown RBP34.11■■■■□ 3.05
SYNPO-203ENST00000518872 HERVK_113Q902F9 699 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 MLXIPQ9HAP2 919 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 GTF2IRD1Q9UHL9 959 aa34.11■■■■□ 3.05
SYNPO-203ENST00000518872 SCN5AQ14524 2016 aa34.1■■■■□ 3.05
SYNPO-203ENST00000518872 PFKMP08237 780 aa34.1■■■■□ 3.05
SYNPO-203ENST00000518872 ACRP10323 421 aa34.1■■■■□ 3.05
SYNPO-203ENST00000518872 METTL7BQ6UX53 244 aa34.1■■■■□ 3.05
SYNPO-203ENST00000518872 BFSP2Q13515 415 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 MFSD10Q14728 455 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 PTGISQ16647 500 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 BRF1Q92994 677 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 VWCEQ96DN2 955 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 CTAGE1Q96RT6 745 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 RTEL1Q9NZ71 1219 aa34.09■■■■□ 3.05
SYNPO-203ENST00000518872 V9GY48 417 aaPredicted RBP34.09■■■■□ 3.05
SYNPO-203ENST00000518872 SPDYE3A6NKU9 549 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 FGBP02675 491 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 ZNF286BP0CG31 522 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 RFC2P35250 354 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 METAP2P50579 478 aaKnown RBP eCLIP34.08■■■■□ 3.05
SYNPO-203ENST00000518872 APOBRQ0VD83 1088 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 KIAA0753Q2KHM9 967 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 GDF6Q6KF10 455 aaPredicted RBP34.08■■■■□ 3.05
SYNPO-203ENST00000518872 TYW1BQ6NUM6 668 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 NLRX1Q86UT6 975 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 CAGE1Q8TC20 777 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 PPP1R13LQ8WUF5 828 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 GPRASP2Q96D09 838 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 MTIF3Q9H2K0 278 aaKnown RBP34.08■■■■□ 3.05
SYNPO-203ENST00000518872 NOD1Q9Y239 953 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 STXBP5LQ9Y2K9 1186 aa34.08■■■■□ 3.05
SYNPO-203ENST00000518872 EVCP57679 992 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 RBL2Q08999 1139 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 UBE2SQ16763 222 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 SCLYQ96I15 445 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 CDHR1Q96JP9 859 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 C16orf70Q9BSU1 422 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 USP26Q9BXU7 913 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 RIC8AQ9NPQ8 531 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 BARHL2Q9NY43 387 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 HDAC6Q9UBN7 1215 aa34.07■■■■□ 3.04
SYNPO-203ENST00000518872 COL6A3P12111 3177 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 NAPAP54920 295 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 CCDC155Q8N6L0 562 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 C7orf31Q8N865 590 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 GIMAP8Q8ND71 665 aaPredicted RBP34.06■■■■□ 3.04
SYNPO-203ENST00000518872 GLT8D2Q9H1C3 349 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 EHMT1Q9H9B1 1298 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 PCDHA6Q9UN73 950 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 PCDHA8Q9Y5H6 950 aa34.06■■■■□ 3.04
SYNPO-203ENST00000518872 STXBP3O00186 592 aa34.05■■■■□ 3.04
SYNPO-203ENST00000518872 ADD1P35611 737 aaKnown RBP34.05■■■■□ 3.04
SYNPO-203ENST00000518872 BCAS3Q9H6U6 928 aa34.05■■■■□ 3.04
SYNPO-203ENST00000518872 UBIAD1Q9Y5Z9 338 aa34.05■■■■□ 3.04
SYNPO-203ENST00000518872 TET1Q8NFU7 2136 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 FOSP01100 380 aaPredicted RBP34.04■■■■□ 3.04
SYNPO-203ENST00000518872 IQCF3P0C7M6 154 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 CHMP4BP1P59074 171 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 RETREG2Q8NC44 543 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 GUCD1Q96NT3 240 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 ALG1Q9BT22 464 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 ZSWIM6Q9HCJ5 1215 aa34.04■■■■□ 3.04
SYNPO-203ENST00000518872 NOP56O00567 594 aaKnown RBP34.03■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms