RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 LOC102724159A0A0B4J2E5 919 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 B4DLN1 442 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 FAM86B1E9PN63 330 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 EIF3JO75822 258 aaKnown RBP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 PGK1P00558 417 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 FAM86B2P0C5J1 330 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 ATP2B1P20020 1258 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 ZNF76P36508 570 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 TNFAIP2Q03169 654 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 NONOQ15233 471 aaKnown RBP eCLIP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 PWP2Q15269 919 aaKnown RBP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 SAFBQ15424 915 aaKnown RBP eCLIP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 LETM2Q2VYF4 491 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 LARP1BQ659C4 914 aaKnown RBP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 LHX8Q68G74 356 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 MCTP1Q6DN14 999 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 KRT25Q7Z3Z0 450 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 FERMT3Q86UX7 667 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 U2AF1L4Q8WU68 220 aaKnown RBP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 CRYGNQ8WXF5 182 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 INTS4Q96HW7 963 aaKnown RBP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 INPP4AQ96PE3 977 aaPredicted RBP11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 BCAS3Q9H6U6 928 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 NRBP1Q9UHY1 535 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 FAM184BQ9ULE4 1060 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 KIF3AQ9Y496 699 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 TELO2Q9Y4R8 837 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 UBIAD1Q9Y5Z9 338 aa11.17□□□□□ -0.62
TOPBP1-209ENST00000513818 DNAH12Q6ZR08 3092 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 ARP10275 920 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 TXNP10599 105 aaKnown RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 RARBP10826 455 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 CD44P16070 742 aaKnown RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 EN2P19622 333 aaPredicted RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 SYT1P21579 422 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 UBA1P22314 1058 aaKnown RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 BEX3Q00994 111 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 SP2Q02086 613 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 SP4Q02446 784 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 GNL2Q13823 731 aaKnown RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 FOXD4L5Q5VV16 416 aaPredicted RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 CCDC62Q6P9F0 684 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 TLK2Q86UE8 772 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 OR6J1Q8NGC5 347 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 SCFD2Q8WU76 684 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 FOXD4L4Q8WXT5 416 aaPredicted RBP11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 GJA10Q969M2 543 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 MXRA8Q9BRK3 442 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 TMEM106CQ9BVX2 250 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 XPNPEP3Q9NQH7 507 aa11.16□□□□□ -0.62
TOPBP1-209ENST00000513818 IGLV3-22A0A075B6J6 115 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 RBM47A0AV96 593 aaKnown RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 DDX39AO00148 427 aaKnown RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 DYNC1LI2O43237 492 aaPredicted RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 FIBPO43427 364 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 SLC37A4O43826 429 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 ATP9AO75110 1047 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 ADAMTS4O75173 837 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 GGPS1O95749 300 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 GJB1P08034 283 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 ARHGAP1Q07960 439 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 MTMR1Q13613 665 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 BECN1Q14457 450 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 TTLL4Q14679 1199 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 GNPTABQ3T906 1256 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 CEP55Q53EZ4 464 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 PRR16Q569H4 304 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 NEK8Q86SG6 692 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 PLA2G4DQ86XP0 818 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 FAM177A1Q8N128 213 aaPredicted RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 DIS3LQ8TF46 1054 aaKnown RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 LENG9Q96B70 501 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 JADE2Q9NQC1 790 aa11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 DDX41Q9UJV9 622 aaKnown RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 GNEQ9Y223 722 aaKnown RBP11.15□□□□□ -0.62
TOPBP1-209ENST00000513818 KIAA0100Q14667 2235 aaKnown RBP11.15□□□□□ -0.63
TOPBP1-209ENST00000513818 SPATA31C2B4DYI2 1134 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 CTAGE5O15320 804 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 DUSP11O75319 330 aaKnown RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 SGPL1O95470 568 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 TFRCP02786 760 aaKnown RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 CYP3A4P08684 503 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 C6orf222P0C671 652 aaPredicted RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 GJA8P48165 433 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 MNX1P50219 401 aaPredicted RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 PKP1Q13835 747 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 DUSP28Q4G0W2 176 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 MCTP2Q6DN12 878 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 IQSEC1Q6DN90 963 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 XRRA1Q6P2D8 792 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 NLRX1Q86UT6 975 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 NOSTRINQ8IVI9 506 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 TEX2Q8IWB9 1127 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 PPP1R13LQ8WUF5 828 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 RNF25Q96BH1 459 aaPredicted RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 GPRASP2Q96D09 838 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 CRISPLD2Q9H0B8 497 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 FOXP1Q9H334 677 aaPredicted RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 AGO4Q9HCK5 861 aaKnown RBP11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 KCNH7Q9NS40 1196 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms