RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 BMPR1AP36894 532 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 COASYQ13057 564 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 KCTD1Q719H9 257 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 FAM160B2Q86V87 743 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 SCFD2Q8WU76 684 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 CHURC1Q8WUH1 139 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 ALG1Q9BT22 464 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 PHF7Q9BWX1 381 aaPredicted RBP10.86□□□□□ -0.67
NUP54-211ENST00000512151 MKNK2Q9HBH9 465 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 CCPG1Q9ULG6 757 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 PRR12Q9ULL5 1215 aa10.86□□□□□ -0.67
NUP54-211ENST00000512151 BARX2Q9UMQ3 279 aaPredicted RBP10.86□□□□□ -0.67
NUP54-211ENST00000512151 MAP1BP46821 2468 aaKnown RBP10.85□□□□□ -0.67
NUP54-211ENST00000512151 WDR87Q6ZQQ6 2873 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 DMXL1Q9Y485 3027 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 TTLL1O95922 423 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 PSEN2P49810 448 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 RBM10P98175 930 aaKnown RBP10.85□□□□□ -0.67
NUP54-211ENST00000512151 PDE4BQ07343 736 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 ARHGAP1Q07960 439 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 IKQ13123 557 aaPredicted RBP10.85□□□□□ -0.67
NUP54-211ENST00000512151 SBK1Q52WX2 424 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 CCDC62Q6P9F0 684 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 CLUAP1Q96AJ1 413 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 C11orf84Q9BUA3 381 aaPredicted RBP10.85□□□□□ -0.67
NUP54-211ENST00000512151 PUS7LQ9H0K6 701 aaKnown RBP10.85□□□□□ -0.67
NUP54-211ENST00000512151 IL1RAPL2Q9NP60 686 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 ADD3Q9UEY8 706 aaKnown RBP10.85□□□□□ -0.67
NUP54-211ENST00000512151 SYNPO2Q9UMS6 1093 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 CHD6Q8TD26 2715 aa10.85□□□□□ -0.67
NUP54-211ENST00000512151 CHD8Q9HCK8 2581 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 LOC102724159A0A0B4J2E5 919 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 PTPDC1A2A3K4 754 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 HAS3O00219 553 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 MMP1P03956 469 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 ICAM1P05362 532 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 RB1P06400 928 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 CALML3P27482 149 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 SLC1A4P43007 532 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 PDE4DQ08499 809 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 PWP2Q15269 919 aaKnown RBP10.84□□□□□ -0.67
NUP54-211ENST00000512151 LY6KQ17RY6 165 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 FIBCD1Q8N539 461 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 TMEM57Q8N5G2 664 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 EFHBQ8N7U6 833 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 C7orf31Q8N865 590 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 CLEC4DQ8WXI8 215 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 IL17RAQ96F46 866 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 GMCL1Q96IK5 515 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 IFIH1Q9BYX4 1025 aaKnown RBP10.84□□□□□ -0.67
NUP54-211ENST00000512151 SMOC2Q9H3U7 446 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 ARPP21Q9UBL0 812 aaPredicted RBP10.84□□□□□ -0.67
NUP54-211ENST00000512151 EXOC6BQ9Y2D4 811 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 PCDHGC5Q9Y5F6 944 aa10.84□□□□□ -0.67
NUP54-211ENST00000512151 EMSYQ7Z589 1322 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 MYO10Q9HD67 2058 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 GSG1L2A8MUP6 293 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 MINDY4BA8MYZ0 360 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 RSPH10B2B2RC85 870 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 PLA2G6O60733 806 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 CT47B1P0C2W7 299 aaPredicted RBP10.83□□□□□ -0.68
NUP54-211ENST00000512151 RSPH10BP0C881 870 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 ZNF286BP0CG31 522 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 THPOP40225 353 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 MFSD10Q14728 455 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 CHST3Q7LGC8 479 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 SUSD6Q92537 303 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 CLP1Q92989 425 aaKnown RBP10.83□□□□□ -0.68
NUP54-211ENST00000512151 DDRGK1Q96HY6 314 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 RC3H2Q9HBD1 1191 aaKnown RBP10.83□□□□□ -0.68
NUP54-211ENST00000512151 PLAGL2Q9UPG8 496 aa10.83□□□□□ -0.68
NUP54-211ENST00000512151 SP100P23497 879 aaPredicted RBP10.82□□□□□ -0.68
NUP54-211ENST00000512151 NRIP1P48552 1158 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 KIAA0753Q2KHM9 967 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 TTBK2Q6IQ55 1244 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 RBM23Q86U06 439 aaKnown RBP10.82□□□□□ -0.68
NUP54-211ENST00000512151 VN1R2Q8NFZ6 395 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 NEDD1Q8NHV4 660 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 SEPT8Q92599 483 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 STRBPQ96SI9 672 aaKnown RBP10.82□□□□□ -0.68
NUP54-211ENST00000512151 RANBP17Q9H2T7 1088 aaKnown RBP10.82□□□□□ -0.68
NUP54-211ENST00000512151 EPB41L4AQ9HCS5 686 aaPredicted RBP10.82□□□□□ -0.68
NUP54-211ENST00000512151 PAG1Q9NWQ8 432 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 PLIN4Q96Q06 1357 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 MYH7P12883 1935 aa10.82□□□□□ -0.68
NUP54-211ENST00000512151 ATRXP46100 2492 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 BRD1O95696 1058 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 GH1P01241 217 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 ITGB1P05556 798 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 CASTP20810 708 aaKnown RBP10.81□□□□□ -0.68
NUP54-211ENST00000512151 SLC16A2P36021 539 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 UBE3CQ15386 1083 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 MCTP2Q6DN12 878 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 RCSD1Q6JBY9 416 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 SERINC5Q86VE9 423 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 KIAA2013Q8IYS2 634 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 ZNF444Q8N0Y2 327 aaPredicted RBP10.81□□□□□ -0.68
NUP54-211ENST00000512151 KREMEN2Q8NCW0 462 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 BOLA2Q9H3K6 86 aa10.81□□□□□ -0.68
NUP54-211ENST00000512151 OTOGLQ3ZCN5 2332 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms