RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 MFSD5Q6N075 450 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PPP1R18Q6NYC8 613 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 NFRKBQ6P4R8 1299 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 ZNF713Q8N859 430 aaPredicted RBP13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PPP1R13LQ8WUF5 828 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 LRCH3Q96II8 777 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 UPF3BQ9BZI7 483 aaKnown RBP13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 BCAS3Q9H6U6 928 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 RIC8AQ9NPQ8 531 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PCDHA6Q9UN73 950 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PCDHA8Q9Y5H6 950 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 FPGSQ05932 587 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PKN1Q16512 942 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 DGKDQ16760 1214 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PFKFB3Q16875 520 aaPredicted RBP13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 HSDL1Q3SXM5 330 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 TEX2Q8IWB9 1127 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PPP1R12CQ9BZL4 782 aa13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 TRMT13Q9NUP7 481 aaKnown RBP13.34□□□□□ -0.27
SH3RF1-205ENST00000511421 PRPF3O43395 683 aaKnown RBP13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 FIBPO43427 364 aa13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 SORBS3O60504 671 aa13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 PPFIA4O75335 1185 aa13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 SCG2P13521 617 aa13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 CYP2C18P33260 490 aa13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 PTPN11Q06124 597 aaPredicted RBP13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 SPATA33Q96N06 139 aa13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 NOC4LQ9BVI4 516 aaKnown RBP13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 NCOA5Q9HCD5 579 aaKnown RBP13.33□□□□□ -0.28
SH3RF1-205ENST00000511421 UMODL1Q5DID0 1318 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 SMCO2A6NFE2 343 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 SPDYE3A6NKU9 549 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 IFNAR1P17181 557 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 ITGB5P18084 799 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 ADCY7P51828 1080 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 ANAPC15P60006 121 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 CCT2P78371 535 aaKnown RBP13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 FAM47CQ5HY64 1035 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 PHKBQ93100 1093 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 IL17RAQ96F46 866 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 ZNF274Q96GC6 653 aaPredicted RBP13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 SENP7Q9BQF6 1050 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 LARP6Q9BRS8 491 aaKnown RBP13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 HIPK3Q9H422 1215 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 MLXIPQ9HAP2 919 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 PDRG1Q9NUG6 133 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 UBIAD1Q9Y5Z9 338 aa13.32□□□□□ -0.28
SH3RF1-205ENST00000511421 HAS3O00219 553 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 F2P00734 622 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 SUPT20HL2P0C7V6 817 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 ZNF286BP0CG31 522 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 CYP2C9P11712 490 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 CSF2RAP15509 400 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 CLK2P49760 499 aaKnown RBP13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 NEDD9Q14511 834 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 METTL7BQ6UX53 244 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 C16orf59Q7L2K0 433 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 NLRX1Q86UT6 975 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 SESTD1Q86VW0 696 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 GPRASP2Q96D09 838 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 CTAGE1Q96RT6 745 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 RNF26Q9BY78 433 aaPredicted RBP13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 ESYT2A0FGR8 921 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 ADAMTS3O15072 1205 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 ATP9AO75110 1047 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 PPFIA3O75145 1194 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 SEC24BO95487 1268 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 FOSP01100 380 aaPredicted RBP13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 PSEN2P49810 448 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 PPIGQ13427 754 aaKnown RBP eCLIP13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 GPR153Q6NV75 609 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 CYFIP1Q7L576 1253 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 TMEM199Q8N511 208 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 PGBD1Q96JS3 809 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 C16orf70Q9BSU1 422 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 ZMYND12Q9H0C1 365 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 GLT8D2Q9H1C3 349 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 WNT8AQ9H1J5 351 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 TMEM260Q9NX78 707 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 TELO2Q9Y4R8 837 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 MYH7BA7E2Y1 1941 aa13.31□□□□□ -0.28
SH3RF1-205ENST00000511421 KCNA2P16389 499 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 CCL23P55773 120 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 CHMP4BP1P59074 171 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 AP3B2Q13367 1082 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 MFSD10Q14728 455 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 KIAA0753Q2KHM9 967 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 GDF6Q6KF10 455 aaPredicted RBP13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 VWCEQ96DN2 955 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 GPR20Q99678 358 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 KATNAL1Q9BW62 490 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 SLC26A6Q9BXS9 759 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 ANO3Q9BYT9 981 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 EHMT1Q9H9B1 1298 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 JADE2Q9NQC1 790 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 HDAC6Q9UBN7 1215 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 GTF2IRD1Q9UHL9 959 aa13.3□□□□□ -0.28
SH3RF1-205ENST00000511421 AKAP17AQ02040 695 aaKnown RBP13.29□□□□□ -0.28
SH3RF1-205ENST00000511421 TMEM240Q5SV17 173 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms