RNA–Protein interactions for RNA: ENST00000509206.1

RNF4-211, Transcript of ring finger protein 4, human

TSL 3

Gene RNF4, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-211	ENST00000509206	RIPK3	Q9Y572	518 aa		4.64	□□□□□ -1.67
RNF4-211	ENST00000509206	PCDHGC5	Q9Y5F6	944 aa		4.64	□□□□□ -1.67
RNF4-211	ENST00000509206	ASTN1	O14525	1302 aa		4.64	□□□□□ -1.67
RNF4-211	ENST00000509206	EP300	Q09472	2414 aa	Predicted RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	DNAJC25-GNG10	A0A024R161	153 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	IDH1	O75874	414 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	EYA4	O95677	639 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	PLCD1	P51178	756 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	CLCN5	P51795	746 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	PURA	Q00577	322 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	ADAM15	Q13444	863 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	MTMR3	Q13615	1198 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	COL19A1	Q14993	1142 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	ANGPT1	Q15389	498 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	ZC3H14	Q6PJT7	736 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	RETREG3	Q86VR2	466 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	FBXO16	Q8IX29	292 aa	Predicted RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	PRPF38A	Q8NAV1	312 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	KREMEN2	Q8NCW0	462 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	OR6J1	Q8NGC5	347 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	PPP1R13L	Q8WUF5	828 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	SECISBP2L	Q93073	1101 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	KIFC2	Q96AC6	838 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	IL17RA	Q96F46	866 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	WDR11	Q9BZH6	1224 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	USP44	Q9H0E7	712 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	PDGFC	Q9NRA1	345 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	SWAP70	Q9UH65	585 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	CDV3	Q9UKY7	258 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	SLC27A5	Q9Y2P5	690 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	RWDD3	Q9Y3V2	267 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	SALL2	Q9Y467	1007 aa	Predicted RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	USP15	Q9Y4E8	981 aa	Predicted RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	ZNFX1	Q9P2E3	1918 aa	Known RBP	4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	IL16	Q14005	1332 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	FANCI	Q9NVI1	1328 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	GVINP1	Q7Z2Y8	2422 aa		4.63	□□□□□ -1.67
RNF4-211	ENST00000509206	PRR5-ARHGAP8	B1AHC4	643 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	LINC01565	O15544	149 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	NBN	O60934	754 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	IGSF3	O75054	1194 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	TBX10	O75333	385 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	LGR5	O75473	907 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	CXCL10	P02778	98 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	SRGAP2B	P0DMP2	458 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	EEF2	P13639	858 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	PTGS1	P23219	599 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	SP100	P23497	879 aa	Predicted RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	ARID4A	P29374	1257 aa	Predicted RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	BMPR1A	P36894	532 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	ATXN1	P54253	815 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	HTRA4	P83105	476 aa	Predicted RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	ARHGAP8	P85298	464 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	CNTN2	Q02246	1040 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	KCNC4	Q03721	635 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	PDE4B	Q07343	736 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	VAC14	Q08AM6	782 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	COASY	Q13057	564 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	DUSP28	Q4G0W2	176 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	DESI1	Q6ICB0	168 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	ADGRA1	Q86SQ6	560 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	RBM23	Q86U06	439 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	DCLK2	Q8N568	766 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	GPR161	Q8N6U8	529 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	C7orf31	Q8N865	590 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	EPS8L1	Q8TE68	723 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	CCDC17	Q96LX7	622 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	MPHOSPH6	Q99547	160 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	IFIH1	Q9BYX4	1025 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	CRNKL1	Q9BZJ0	848 aa	Known RBP	4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	KATNBL1	Q9H079	304 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	TLE6	Q9H808	572 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	ACAD9	Q9H845	621 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	KANSL2	Q9H9L4	492 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	VTA1	Q9NP79	307 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	COPRS	Q9NQ92	184 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	NCDN	Q9UBB6	729 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	SORCS3	Q9UPU3	1222 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	NR2E1	Q9Y466	385 aa		4.62	□□□□□ -1.67
RNF4-211	ENST00000509206	TRIO	O75962	3097 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	PLXNA3	P51805	1871 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	MAGEB6P1	A0A0J9YX57	407 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	DCDC2B	A2VCK2	349 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	GRM6	O15303	877 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	CKB	P12277	381 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	AKR1B1	P15121	316 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	ATF7	P17544	494 aa	Predicted RBP	4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	NRIP1	P48552	1158 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	COPS2	P61201	443 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	IK	Q13123	557 aa	Predicted RBP	4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	NR6A1	Q15406	480 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	TAPT1	Q6NXT6	567 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	CLEC10A	Q8IUN9	316 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	DHX37	Q8IY37	1157 aa	Known RBP	4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	EFHB	Q8N7U6	833 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	DTWD2	Q8NBA8	298 aa		4.61	□□□□□ -1.67
RNF4-211	ENST00000509206	SMRP1	Q8NCR6	262 aa		4.61	□□□□□ -1.67

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