RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 PGBD1Q96JS3 809 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 INPP4AQ96PE3 977 aaPredicted RBP13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 DEFB118Q96PH6 123 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 CRISPLD2Q9H0B8 497 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 BRMS1Q9HCU9 246 aa13.59□□□□□ -0.23
PDLIM5-208ENST00000504489 DUSP11O75319 330 aaKnown RBP13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 RGS20O76081 388 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 CYP3A4P08684 503 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 TGFB3P10600 412 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 ICAM3P32942 547 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 ADCYAP1R1P41586 468 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 FOSBP53539 338 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 ARHGAP4P98171 946 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 TTLL4Q14679 1199 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 SAFBQ15424 915 aaKnown RBP eCLIP13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 DUSP28Q4G0W2 176 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 CCDC62Q6P9F0 684 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 SEPT14Q6ZU15 432 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 OXER1Q8TDS5 423 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 U2AF1L4Q8WU68 220 aaKnown RBP13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 WDR11Q9BZH6 1224 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 Q9Y3F1 56 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 UBIAD1Q9Y5Z9 338 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 TCHHQ07283 1943 aa13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 TRIP12Q14669 1992 aaPredicted RBP13.58□□□□□ -0.24
PDLIM5-208ENST00000504489 ALPK3Q96L96 1907 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 CCDC85CA6NKD9 419 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 BTBD18B2RXH4 712 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 NKRFO15226 690 aaKnown RBP eCLIP13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 MAFGO15525 162 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 ADCY6O43306 1168 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 RARBP10826 455 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 SMPD1P17405 629 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 USP11P51784 963 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 GUCY1B3Q02153 619 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 NONOQ15233 471 aaKnown RBP eCLIP13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 GNPTABQ3T906 1256 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 NIPA1Q7RTP0 329 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 DIS3L2Q8IYB7 885 aaKnown RBP13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 TNFRSF25Q93038 417 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 GPRASP2Q96D09 838 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 MXRA8Q9BRK3 442 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 JADE2Q9NQC1 790 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 RTEL1Q9NZ71 1219 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 OGDHLQ9ULD0 1010 aa13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 GNEQ9Y223 722 aaKnown RBP13.57□□□□□ -0.24
PDLIM5-208ENST00000504489 SCN10AQ9Y5Y9 1956 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 CCDC194A0A1B0GVG4 234 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 SPATA31C2B4DYI2 1134 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 FIBPO43427 364 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 EDIL3O43854 480 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 TXNP10599 105 aaKnown RBP13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 ITGB5P18084 799 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 CIITAP33076 1130 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 NKX3-2P78367 333 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 NR5A1Q13285 461 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 CEP55Q53EZ4 464 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 ANO1Q5XXA6 986 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 LARP1BQ659C4 914 aaKnown RBP13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 NLRX1Q86UT6 975 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 TBCKQ8TEA7 893 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 ZFP91Q96JP5 570 aaPredicted RBP13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 CDHR1Q96JP9 859 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 UPF3AQ9H1J1 476 aaKnown RBP13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 FOXP1Q9H334 677 aaPredicted RBP13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 DDX41Q9UJV9 622 aaKnown RBP13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 MRVI1Q9Y6F6 885 aa13.56□□□□□ -0.24
PDLIM5-208ENST00000504489 MEIS1O00470 390 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 ARIH2O95376 493 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 TFRCP02786 760 aaKnown RBP13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 PDCP20941 246 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 ZNF76P36508 570 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 GJA9P57773 515 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 SEMA3FQ13275 785 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 TMEM63BQ5T3F8 832 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 ANKLE1Q8NAG6 615 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 ARRDC4Q8NCT1 418 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 LENG1Q96BZ8 264 aaPredicted RBP13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 XPNPEP3Q9NQH7 507 aa13.55□□□□□ -0.24
PDLIM5-208ENST00000504489 IGLV3-22A0A075B6J6 115 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 CYP3A7-CYP3A51PA0A087WV96 503 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 FAM86B1E9PN63 330 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 ADAMTS4O75173 837 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 HSP90AA1P07900 732 aaKnown RBP13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 FAM86B2P0C5J1 330 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 CYP3A7P24462 503 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 U2AF2P26368 475 aaKnown RBP eCLIP13.54□□□□□ -0.242e-7■■■■□ 19.5
PDLIM5-208ENST00000504489 MTMR1Q13613 665 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 BECN1Q14457 450 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 LY6KQ17RY6 165 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 INF2Q27J81 1249 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 EARS2Q5JPH6 523 aaKnown RBP13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 GJC2Q5T442 439 aaPredicted RBP13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 MOXD1Q6UVY6 613 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 PIK3AP1Q6ZUJ8 805 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 NEK8Q86SG6 692 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 TLK2Q86UE8 772 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 KLHDC9Q8NEP7 349 aa13.54□□□□□ -0.24
PDLIM5-208ENST00000504489 CYP2W1Q8TAV3 490 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms