RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MTMR4Q9NYA4 1195 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MACROD2A1Z1Q3 448 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 TARSL2A2RTX5 802 aaKnown RBP17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 POTEMA6NI47 508 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 IPO7O95373 1038 aaKnown RBP17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SNHG28P0DPA3 235 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LMAN1P49257 510 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ADCY7P51828 1080 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 KIF5AQ12840 1032 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PDIA5Q14554 519 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SMCR8Q8TEV9 937 aaPredicted RBP17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CCDC42Q96M95 316 aa17.86■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 IGKV6D-41A0A0C4DH26 115 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 NFKBIEO00221 500 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LCA5LO95447 670 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CAPN2P17655 700 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 GABPAQ06546 454 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MAN2A1Q16706 1144 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 TMEM119Q4V9L6 283 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LRRC55Q6ZSA7 311 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 GLIS3Q8NEA6 775 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 VIPAS39Q9H9C1 493 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ABCB11O95342 1321 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MYH10P35580 1976 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SCN9AQ15858 1988 aa17.85■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 IDEP14735 1019 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ECM1Q16610 540 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ARHGAP27Q6ZUM4 889 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 LRRC47Q8N1G4 583 aaKnown RBP17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 FAM71BQ8TC56 605 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 TSGA10Q9BZW7 698 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 FAM207AQ9NSI2 230 aaPredicted RBP17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PCDHA13Q9Y5I0 950 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ZC3H4Q9UPT8 1303 aaKnown RBP17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CLGNO14967 610 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 AKR1B1P15121 316 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 TMEM266Q2M3C6 531 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ASPRV1Q53RT3 343 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SH2D4AQ9H788 454 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 BCCIPQ9P287 314 aaKnown RBP eCLIP17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 DAGLAQ9Y4D2 1042 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CAPN6Q9Y6Q1 641 aa17.84■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MYH7BA7E2Y1 1941 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PPIP5K2O43314 1243 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 PPP1R11O60927 126 aaPredicted RBP17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 EIF4A3P38919 411 aaKnown RBP17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 AARSP49588 968 aaKnown RBP eCLIP17.83■□□□□ 0.454e-6■■■■■ 30.6
MSH5-SAPCD1-208ENST00000498473 LRRC63Q05C16 580 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SPA17Q15506 151 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ZSCAN26Q16670 478 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CREG2Q8IUH2 290 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CLEC10AQ8IUN9 316 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SNX29Q8TEQ0 813 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 BAP1Q92560 729 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 DDX12PQ92771 950 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 CDK5RAP3Q96JB5 506 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 ZC3H12CQ9C0D7 883 aaKnown RBP17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 MLXIPQ9HAP2 919 aa17.83■□□□□ 0.45
MSH5-SAPCD1-208ENST00000498473 SYF2O95926 243 aaKnown RBP17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MCM3P25205 808 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 KIF11P52732 1056 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 LRRC41Q15345 812 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SLF2Q8IX21 1173 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CCDC102AQ96A19 550 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MMRN2Q9H8L6 949 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 JMJD4Q9H9V9 463 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GPCPD1Q9NPB8 672 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SNX12Q9UMY4 172 aa17.83■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ZMYND10O75800 440 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MYBL2P10244 700 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CLK2P49760 499 aaKnown RBP17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 EIF6P56537 245 aaKnown RBP17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 C2orf54Q08AI8 447 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 UBE2SQ16763 222 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CCDC96Q2M329 555 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HAS1Q92839 578 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 DNAJC19Q96DA6 116 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TRIM34Q9BYJ4 488 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 IFIH1Q9BYX4 1025 aaKnown RBP17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MED4Q9NPJ6 270 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RIC8AQ9NPQ8 531 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 JADE2Q9NQC1 790 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HPCAL4Q9UM19 191 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 JRKLQ9Y4A0 524 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 LRRC53A6NM62 1247 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 G3V3G9 751 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PSMD2Q13200 908 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 DCAF8Q5TAQ9 597 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 KRT79Q5XKE5 535 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PPP4R3AQ6IN85 833 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CCNI2Q6ZMN8 369 aaPredicted RBP17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TRIM58Q8NG06 486 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GOLGA5Q8TBA6 731 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CAGE1Q8TC20 777 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TBC1D22AQ8WUA7 517 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ARFGEF1Q9Y6D6 1849 aa17.82■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 FER1L6Q2WGJ9 1857 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 F8W031 263 aaPredicted RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 USO1O60763 962 aaKnown RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MOCS3O95396 460 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms