RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MTIF2P46199 727 aaKnown RBP23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 MAP3K10Q02779 954 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 MIIPQ5JXC2 388 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 GLIS3Q8NEA6 775 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 SHTN1A0MZ66 631 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 SSBP05455 408 aaKnown RBP eCLIP23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 HAUS3Q68CZ6 603 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 TEX2Q8IWB9 1127 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 CHURC1Q8WUH1 139 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 FAM20AQ96MK3 541 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 MYOZ2Q9NPC6 264 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 ATAD5Q96QE3 1844 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 PLA2G6O60733 806 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 LRRC63Q05C16 580 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 ZYXQ15942 572 aaKnown RBP23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 CCDC174Q6PII3 467 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 CYP26C1Q6V0L0 522 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 KIFC2Q96AC6 838 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 GLIS2Q9BZE0 524 aaPredicted RBP23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 TAOK3Q9H2K8 898 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 SH2D4AQ9H788 454 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 BMP2KQ9NSY1 1161 aaPredicted RBP23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 PANK4Q9NVE7 773 aa23.5■■□□□ 1.35
CCDC88B-208ENST00000492980 NKRFO15226 690 aaKnown RBP eCLIP23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 MSH4O15457 936 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 ZBTB7AO95365 584 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 GNG11P61952 73 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 LRRC41Q15345 812 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 DALRD3Q5D0E6 543 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 NCAPH2Q6IBW4 605 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 WDR24Q96S15 920 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 NOC4LQ9BVI4 516 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 CAPN11Q9UMQ6 739 aa23.49■■□□□ 1.35
CCDC88B-208ENST00000492980 POTEFA5A3E0 1075 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 POTEIP0CG38 1075 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 TBC1D8BQ0IIM8 1120 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 FOXR2Q6PJQ5 311 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 POTEGQ6S5H5 508 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 POTEEQ6S8J3 1075 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 GPBP1Q86WP2 473 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 CATSPER3Q86XQ3 398 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 ERMNQ8TAM6 284 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 DNAJC7Q99615 494 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 CYP11B2P19099 503 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 SLC12A3P55017 1021 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 FAM26FQ5R3K3 315 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 FAM160B2Q86V87 743 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 CYP2W1Q8TAV3 490 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 TBC1D5Q92609 795 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 TTYH3Q9C0H2 523 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 VAV3Q9UKW4 847 aa23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 LUC7L2Q9Y383 392 aaKnown RBP23.48■■□□□ 1.35
CCDC88B-208ENST00000492980 A0A0U1RQJ8 604 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 RASSF10A6NK89 507 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 LRRC55Q6ZSA7 311 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 MYOCDQ8IZQ8 938 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 OR8K1Q8NGG5 319 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 ATRIPQ8WXE1 791 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 IGLV3-22A0A075B6J6 115 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 NPHP3-ACAD11A0A0J9YXS1 232 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 FGFR1OPO95684 399 aaKnown RBP23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 CFBP00751 764 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 ASNSP08243 561 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 SPATA31C1P0DKV0 1188 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 RPA1P27694 616 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 CASQ1P31415 396 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 ZNF76P36508 570 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 CCDC84Q86UT8 332 aaPredicted RBP23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 CCDC65Q8IXS2 484 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 ACRBPQ8NEB7 543 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 JDP2Q8WYK2 163 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 PCDHA2Q9Y5H9 948 aa23.47■■□□□ 1.35
CCDC88B-208ENST00000492980 ABCB11O95342 1321 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 KLK7P49862 253 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 ERGIC2Q96RQ1 377 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 NUP58Q9BVL2 599 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 LZTFL1Q9NQ48 299 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 FEM1BQ9UK73 627 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 STK24Q9Y6E0 443 aa23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 V9GYY5 206 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-208ENST00000492980 GCOM1H8Y6P7 765 aaPredicted RBP23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 URI1O94763 535 aaPredicted RBP23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 POLR2MP0CAP2 368 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 ZCWPW2Q504Y3 356 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 ARSHQ5FYA8 562 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 PDCL2Q8N4E4 241 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 RETREG2Q8NC44 543 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 LRRN4CLQ8ND94 238 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 CHP1Q99653 195 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 TSG101Q99816 390 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 FGFBP2Q9BYJ0 223 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 FBXO28Q9NVF7 368 aa23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 SCAF8Q9UPN6 1271 aaKnown RBP23.45■■□□□ 1.35
CCDC88B-208ENST00000492980 FRMD3A2A2Y4 597 aa23.45■■□□□ 1.34
CCDC88B-208ENST00000492980 PHF20L1A8MW92 1017 aa23.45■■□□□ 1.34
CCDC88B-208ENST00000492980 NFKBIEO00221 500 aa23.45■■□□□ 1.34
CCDC88B-208ENST00000492980 RASA3Q14644 834 aa23.45■■□□□ 1.34
CCDC88B-208ENST00000492980 KIF4BQ2VIQ3 1234 aa23.45■■□□□ 1.34
CCDC88B-208ENST00000492980 MRPL11Q9Y3B7 192 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms