RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 LAMA4Q16363 1823 aa9.63□□□□□ -0.87
USP39-216ENST00000490193 RALGAPA2Q2PPJ7 1873 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 NLRC5Q86WI3 1866 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 PCP11498 1178 aaKnown RBP9.62□□□□□ -0.87
USP39-216ENST00000490193 MX1P20591 662 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 CASTP20810 708 aaKnown RBP9.62□□□□□ -0.87
USP39-216ENST00000490193 PTK7Q13308 1070 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 TCTN1Q2MV58 587 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 TRIM71Q2Q1W2 868 aaKnown RBP9.62□□□□□ -0.87
USP39-216ENST00000490193 GPATCH4Q5T3I0 446 aaKnown RBP9.62□□□□□ -0.87
USP39-216ENST00000490193 TRAF7Q6Q0C0 670 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 TMCO2Q7Z6W1 182 aaPredicted RBP9.62□□□□□ -0.87
USP39-216ENST00000490193 OTUD7AQ8TE49 926 aaPredicted RBP9.62□□□□□ -0.87
USP39-216ENST00000490193 KATNAL1Q9BW62 490 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 HELLSQ9NRZ9 838 aa9.62□□□□□ -0.87
USP39-216ENST00000490193 FAM86C2PA6NEL3 165 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 HAS3O00219 553 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 F2P00734 622 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 FGAP02671 866 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 HOXD8P13378 290 aaPredicted RBP9.61□□□□□ -0.87
USP39-216ENST00000490193 NT5C2P49902 561 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 HTRA4P83105 476 aaPredicted RBP9.61□□□□□ -0.87
USP39-216ENST00000490193 IKBKEQ14164 716 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 DGKDQ16760 1214 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 LY6KQ17RY6 165 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 PUS10Q3MIT2 529 aaKnown RBP9.61□□□□□ -0.87
USP39-216ENST00000490193 IFNLR1Q8IU57 520 aaPredicted RBP9.61□□□□□ -0.87
USP39-216ENST00000490193 GJD3Q8N144 294 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.61□□□□□ -0.87
USP39-216ENST00000490193 NSUN6Q8TEA1 469 aaKnown RBP9.61□□□□□ -0.87
USP39-216ENST00000490193 IWS1Q96ST2 819 aa9.61□□□□□ -0.87
USP39-216ENST00000490193 ATG2AQ2TAZ0 1938 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 ABCB11O95342 1321 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 EMSYQ7Z589 1322 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 WDFY4Q6ZS81 3184 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 GRXCR2A6NFK2 248 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 PSEN2P49810 448 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 MBTPS1Q14703 1052 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 COL19A1Q14993 1142 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 STXBP2Q15833 593 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 C7orf31Q8N865 590 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 PPTC7Q8NI37 304 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 NEK9Q8TD19 979 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 SYTL5Q8TDW5 730 aaPredicted RBP9.6□□□□□ -0.87
USP39-216ENST00000490193 EVI5LQ96CN4 794 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 MRPL38Q96DV4 380 aaKnown RBP9.6□□□□□ -0.87
USP39-216ENST00000490193 SAMD11Q96NU1 681 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 TAAR1Q96RJ0 339 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 KCNH6Q9H252 994 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 TOMM22Q9NS69 142 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 COL20A1Q9P218 1284 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 HDAC6Q9UBN7 1215 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 CTNNA3Q9UI47 895 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 DDX41Q9UJV9 622 aaKnown RBP9.6□□□□□ -0.87
USP39-216ENST00000490193 MTUS1Q9ULD2 1270 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 INSL6Q9Y581 213 aa9.6□□□□□ -0.87
USP39-216ENST00000490193 TRIOO75962 3097 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 LGR5O75473 907 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 EIF3JO75822 258 aaKnown RBP9.59□□□□□ -0.87
USP39-216ENST00000490193 HSPD1P10809 573 aaKnown RBP9.59□□□□□ -0.87
USP39-216ENST00000490193 ALADP13716 330 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 IL9P15248 144 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 KCNA5P22460 613 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 MRE11P49959 708 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 CHMP4BP1P59074 171 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 GHRHRQ02643 423 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 LAMC2Q13753 1193 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 MFSD10Q14728 455 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 KIAA0753Q2KHM9 967 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 USH1GQ495M9 461 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 TIGD5Q53EQ6 642 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 RRP12Q5JTH9 1297 aaKnown RBP9.59□□□□□ -0.87
USP39-216ENST00000490193 ZNF618Q5T7W0 954 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 PTCRAQ6ISU1 281 aaPredicted RBP9.59□□□□□ -0.87
USP39-216ENST00000490193 SEPT14Q6ZU15 432 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 DGKHQ86XP1 1220 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 MCF2L2Q86YR7 1114 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 FBXO22Q8NEZ5 403 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 TBC1D5Q92609 795 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 WNT8BQ93098 351 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 RMDN3Q96TC7 470 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 C17orf80Q9BSJ5 609 aa9.59□□□□□ -0.87
USP39-216ENST00000490193 ZNF318Q5VUA4 2279 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 A0A0D9SFI3 127 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 PPFIA4O75335 1185 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 AMHP03971 560 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 HOXC8P31273 242 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 CDC37Q16543 378 aaPredicted RBP9.58□□□□□ -0.88
USP39-216ENST00000490193 PTPROQ16827 1216 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 MCMDC2Q4G0Z9 681 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 PLEKHG4Q58EX7 1191 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP39-216ENST00000490193 MFSD6Q6ZSS7 791 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 CHST3Q7LGC8 479 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 SERINC5Q86VE9 423 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 ANKS1AQ92625 1134 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 FAM227BQ96M60 508 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 CRBNQ96SW2 442 aa9.58□□□□□ -0.88
USP39-216ENST00000490193 RNF41Q9H4P4 317 aaPredicted RBP9.58□□□□□ -0.88
USP39-216ENST00000490193 PXMP2Q9NR77 195 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms