RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 S1PR5Q9H228 398 aa8.73□□□□□ -1.01
COL9A1-209ENST00000489861 MFSD1Q9H3U5 465 aa8.73□□□□□ -1.01
COL9A1-209ENST00000489861 RC3H2Q9HBD1 1191 aaKnown RBP8.73□□□□□ -1.01
COL9A1-209ENST00000489861 HDAC6Q9UBN7 1215 aa8.73□□□□□ -1.01
COL9A1-209ENST00000489861 CDH22Q9UJ99 828 aa8.73□□□□□ -1.01
COL9A1-209ENST00000489861 KIAA1217Q5T5P2 1943 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 ITGB1P05556 798 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 ASGR2P07307 311 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 PTK7Q13308 1070 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 MTX1Q13505 466 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 BRDTQ58F21 947 aaPredicted RBP8.72□□□□□ -1.01
COL9A1-209ENST00000489861 TNNI3KQ59H18 835 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 C16orf86Q6ZW13 317 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 SUMF1Q8NBK3 374 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 SPPL3Q8TCT6 385 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 ATP8B4Q8TF62 1192 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 SSH1Q8WYL5 1049 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 ARHGAP45Q92619 1136 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 FEM1BQ9UK73 627 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 FPGT-TNNI3KV9GXZ4 949 aa8.72□□□□□ -1.01
COL9A1-209ENST00000489861 DSPP15924 2871 aaKnown RBP8.72□□□□□ -1.01
COL9A1-209ENST00000489861 C2CD4DB7Z1M9 353 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 PER2O15055 1255 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 PRKAB2O43741 272 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 ARIH2O95376 493 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 ALAS1P13196 640 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 ALDH5A1P51649 535 aaPredicted RBP8.71□□□□□ -1.02
COL9A1-209ENST00000489861 PPP2R5BQ15173 497 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 C12orf60Q5U649 245 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 LRRC47Q8N1G4 583 aaKnown RBP8.71□□□□□ -1.02
COL9A1-209ENST00000489861 LCORLQ8N3X6 602 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 AFG1LQ8WV93 481 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 RIN2Q8WYP3 895 aaPredicted RBP8.71□□□□□ -1.02
COL9A1-209ENST00000489861 PPP2R3CQ969Q6 453 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 APOL5Q9BWW9 433 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 TSHZ2Q9NRE2 1034 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 TLR7Q9NYK1 1049 aaKnown RBP8.71□□□□□ -1.02
COL9A1-209ENST00000489861 EMSYQ7Z589 1322 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 ADGRA3Q8IWK6 1321 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 RAD50Q92878 1312 aa8.71□□□□□ -1.02
COL9A1-209ENST00000489861 NBEAQ8NFP9 2946 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 RSPH10B2B2RC85 870 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 NKRFO15226 690 aaKnown RBP eCLIP8.7□□□□□ -1.02
COL9A1-209ENST00000489861 MMP3P08254 477 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 RSPH10BP0C881 870 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 SNAP25P60880 206 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 G3BP1Q13283 466 aaKnown RBP eCLIP8.7□□□□□ -1.02
COL9A1-209ENST00000489861 SYCE2Q6PIF2 218 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 NSMFQ6X4W1 530 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 P2RX5Q93086 422 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 ALG1Q9BT22 464 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 PLVAPQ9BX97 442 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 GPR108Q9NPR9 543 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 NYAP2Q9P242 653 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 DBNLQ9UJU6 430 aaKnown RBP8.7□□□□□ -1.02
COL9A1-209ENST00000489861 RWDD3Q9Y3V2 267 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 RALGAPA1Q6GYQ0 2036 aa8.7□□□□□ -1.02
COL9A1-209ENST00000489861 PNMA6EA0A0J9YXQ4 647 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 ZIC2O95409 532 aaPredicted RBP8.69□□□□□ -1.02
COL9A1-209ENST00000489861 TXNP10599 105 aaKnown RBP8.69□□□□□ -1.02
COL9A1-209ENST00000489861 THPOP40225 353 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 PDE4BQ07343 736 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 KCNC3Q14003 757 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 BAATQ14032 418 aaPredicted RBP8.69□□□□□ -1.02
COL9A1-209ENST00000489861 TKFCQ3LXA3 575 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 TRMT2AQ8IZ69 625 aaKnown RBP8.69□□□□□ -1.02
COL9A1-209ENST00000489861 C7orf31Q8N865 590 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 POF1BQ8WVV4 589 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 SEPT8Q92599 483 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 ZNF689Q96CS4 500 aaPredicted RBP8.69□□□□□ -1.02
COL9A1-209ENST00000489861 TLE6Q9H808 572 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 ARMT1Q9H993 441 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 FOXD4L1Q9NU39 408 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 CLIP2Q9UDT6 1046 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 KAT6AQ92794 2004 aa8.69□□□□□ -1.02
COL9A1-209ENST00000489861 SMG1Q96Q15 3661 aaKnown RBP8.68□□□□□ -1.02
COL9A1-209ENST00000489861 TCRBV5S4A2TA0A5A2 114 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 SOBPA7XYQ1 873 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 TMEM232C9JQI7 657 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 HAS3O00219 553 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 PDE6AP16499 860 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 SDHBP21912 280 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 PSEN2P49810 448 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 BTG3Q14201 252 aaPredicted RBP8.68□□□□□ -1.02
COL9A1-209ENST00000489861 SLFNL1Q499Z3 407 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 SERINC5Q86VE9 423 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 KLHL23Q8NBE8 558 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 SCFD2Q8WU76 684 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 NEK1Q96PY6 1258 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 RTP3Q9BQQ7 232 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 RTKNQ9BST9 563 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 POMKQ9H5K3 350 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 ERVK-5Q9HDB9 667 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 LIMD1Q9UGP4 676 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 CDV3Q9UKY7 258 aaKnown RBP8.68□□□□□ -1.02
COL9A1-209ENST00000489861 NR2E1Q9Y466 385 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 MRPL42Q9Y6G3 142 aaKnown RBP8.68□□□□□ -1.02
COL9A1-209ENST00000489861 LOXHD1Q8IVV2 1947 aa8.68□□□□□ -1.02
COL9A1-209ENST00000489861 BPTFQ12830 3046 aa8.67□□□□□ -1.02
COL9A1-209ENST00000489861 IGKV6D-41A0A0C4DH26 115 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms