RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 MTDHQ86UE4 582 aaKnown RBP4.33□□□□□ -1.72
GPNMB-212ENST00000487890 PPIL6Q8IXY8 311 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 TCEAL8Q8IYN2 117 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 IFNL3Q8IZI9 196 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 TMEM130Q8N3G9 435 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 DTWD2Q8NBA8 298 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.33□□□□□ -1.72
GPNMB-212ENST00000487890 PCDH19Q8TAB3 1148 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 JPH3Q8WXH2 748 aaPredicted RBP4.33□□□□□ -1.72
GPNMB-212ENST00000487890 GPR101Q96P66 508 aaPredicted RBP4.33□□□□□ -1.72
GPNMB-212ENST00000487890 RHOBTB2Q9BYZ6 727 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 COQ6Q9Y2Z9 468 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 SPEF1Q9Y4P9 236 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 NPFFR2Q9Y5X5 522 aa4.33□□□□□ -1.72
GPNMB-212ENST00000487890 CLTCL1P53675 1640 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ALKQ9UM73 1620 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 NWD1Q149M9 1564 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 NKTRP30414 1462 aaKnown RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ZFYVE9O95405 1425 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 PLEKHG1Q9ULL1 1385 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 E2F8A0AVK6 867 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 AURKAO14965 403 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 LEFTY1O75610 366 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 RFPL1O75677 317 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 CD3EP07766 207 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 LCP1P13796 627 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 IFNGR1P15260 489 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ELNP15502 786 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ATP2A2P16615 1042 aaKnown RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 SNRPNP63162 240 aaKnown RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 POU4F1Q01851 419 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 NMIQ13287 307 aaPredicted RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 TCIRG1Q13488 830 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 SART3Q15020 963 aaKnown RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 GRIK4Q16099 956 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 PTPN21Q16825 1174 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 INAVAQ3KP66 663 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ATP13A4Q4VNC1 1196 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 SGO2Q562F6 1265 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 SYCP2LQ5T4T6 812 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 NXNQ6DKJ4 435 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 IQSEC1Q6DN90 963 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 CRTC3Q6UUV7 619 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 RSPO2Q6UXX9 243 aaPredicted RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 FAM214BQ7L5A3 538 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 CCDC103Q8IW40 242 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 TOP6BLQ8N6T0 577 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 CHTF18Q8WVB6 975 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 FCRL3Q96P31 734 aaPredicted RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 CAMKK2Q96RR4 588 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 UBL7Q96S82 380 aaPredicted RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ZFYVE21Q9BQ24 234 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 SPTLC3Q9NUV7 552 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 THG1LQ9NWX6 298 aaKnown RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 IP6K2Q9UHH9 426 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 TPX2Q9ULW0 747 aaKnown RBP4.32□□□□□ -1.72
GPNMB-212ENST00000487890 ST14Q9Y5Y6 855 aa4.32□□□□□ -1.72
GPNMB-212ENST00000487890 DIP2AQ14689 1571 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 TRPM2O94759 1503 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 RRBP1Q9P2E9 1410 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 SHISA3A0PJX4 238 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 MEFVO15553 781 aaPredicted RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 SART1O43290 800 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 GAS2O43903 313 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 EIF3JO75822 258 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 MYL1P05976 194 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 GSNP06396 782 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 PLS3P13797 630 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 CYP7A1P22680 504 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 LTBRP36941 435 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 GRIK1P39086 918 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 IARSP41252 1262 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 LSSP48449 732 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 MECP2P51608 486 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 PAK1Q13153 545 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 TESK1Q15569 626 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 TMEM177Q53S58 311 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 ACBD5Q5T8D3 534 aaPredicted RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 PPP4R4Q6NUP7 873 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 SLC4A10Q6U841 1118 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 KSR2Q6VAB6 950 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 LBX2Q6XYB7 198 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 ZC3H7AQ8IWR0 971 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 TPH2Q8IWU9 490 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 MAGEB6Q8N7X4 407 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 NEDD1Q8NHV4 660 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 SLC16A10Q8TF71 515 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 EZH1Q92800 747 aaPredicted RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 IRF7Q92985 503 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 FUBP3Q96I24 572 aaKnown RBP eCLIP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 FAM46AQ96IP4 442 aaKnown RBP4.31□□□□□ -1.72
GPNMB-212ENST00000487890 MENTQ9BUN1 341 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 AKTIPQ9H8T0 292 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 EMC7Q9NPA0 242 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 C1GALT1Q9NS00 363 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 GPR27Q9NS67 375 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 CLEC1BQ9P126 229 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 B4GALT6Q9UBX8 382 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 RNF112Q9ULX5 631 aa4.31□□□□□ -1.72
GPNMB-212ENST00000487890 ZKSCAN5Q9Y2L8 839 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms