RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ZCCHC8Q6NZY4 707 aaKnown RBP7.74□□□□□ -1.17
USP48-209ENST00000487880 ZNF605Q86T29 641 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 LRRTM3Q86VH5 581 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 PIP4K2CQ8TBX8 421 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 AP5M1Q9H0R1 490 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 SLKQ9H2G2 1235 aaPredicted RBP7.74□□□□□ -1.17
USP48-209ENST00000487880 CBLCQ9ULV8 474 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 A0A087X0B3 334 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 MYOCOSA0A1B0GUC4 107 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 HGSO14964 777 aaPredicted RBP7.73□□□□□ -1.17
USP48-209ENST00000487880 NKRFO15226 690 aaKnown RBP eCLIP7.73□□□□□ -1.17
USP48-209ENST00000487880 ZBTB7AO95365 584 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 NPTXRO95502 500 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 APPP05067 770 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 PYGMP11217 842 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 GNAT1P11488 350 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 FBLN1P23142 703 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 MLANAQ16655 118 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 FAM47CQ5HY64 1035 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 OLFML2BQ68BL8 750 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 ZC3H14Q6PJT7 736 aaKnown RBP7.73□□□□□ -1.17
USP48-209ENST00000487880 UHMK1Q8TAS1 419 aaKnown RBP7.73□□□□□ -1.17
USP48-209ENST00000487880 DIRC2Q96SL1 478 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 DCP1AQ9NPI6 582 aaPredicted RBP7.73□□□□□ -1.17
USP48-209ENST00000487880 PALD1Q9ULE6 856 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 COQ6Q9Y2Z9 468 aa7.73□□□□□ -1.17
USP48-209ENST00000487880 TCRBV5S4A2TA0A5A2 114 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 ZNF561-AS1K7EIQ3 104 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 GSTA4O15217 222 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 OPA1O60313 960 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 COL6A2P12110 1019 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 LACTBP83111 547 aaPredicted RBP7.72□□□□□ -1.17
USP48-209ENST00000487880 ZNF662Q6ZS27 426 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 OVCH1Q7RTY7 1134 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 TMC6Q7Z403 805 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 FAM177A1Q8N128 213 aaPredicted RBP7.72□□□□□ -1.17
USP48-209ENST00000487880 IGSF22Q8N9C0 903 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 PHOSPHO1Q8TCT1 267 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 PANK1Q8TE04 598 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 DDX1Q92499 740 aaKnown RBP7.72□□□□□ -1.17
USP48-209ENST00000487880 ORAI3Q9BRQ5 295 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 TARS2Q9BW92 718 aaKnown RBP7.72□□□□□ -1.17
USP48-209ENST00000487880 PDGFDQ9GZP0 370 aaPredicted RBP7.72□□□□□ -1.17
USP48-209ENST00000487880 MCOLN1Q9GZU1 580 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 SMOC1Q9H4F8 434 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 KCNK12Q9HB15 430 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 GOLGA2P5Q9HBQ8 144 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 SHROOM4Q9ULL8 1493 aa7.72□□□□□ -1.17
USP48-209ENST00000487880 SBNO2Q9Y2G9 1366 aa7.71□□□□□ -1.17
USP48-209ENST00000487880 GSG1L2A8MUP6 293 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 KRIT1O00522 736 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 GLRX3O76003 335 aaKnown RBP7.71□□□□□ -1.18
USP48-209ENST00000487880 AMY2AP04746 511 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 PDE6AP16499 860 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 AMY2BP19961 511 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 CANXP27824 592 aaKnown RBP7.71□□□□□ -1.18
USP48-209ENST00000487880 MECP2P51608 486 aaKnown RBP7.71□□□□□ -1.18
USP48-209ENST00000487880 GPR19Q15760 415 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 TMEM177Q53S58 311 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 DDX53Q86TM3 631 aaKnown RBP7.71□□□□□ -1.18
USP48-209ENST00000487880 KRTAP19-1Q8IUB9 90 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 SH3RF2Q8TEC5 729 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 SMURF1Q9HCE7 757 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 SAMD15Q9P1V8 674 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 DBR1Q9UK59 544 aaKnown RBP7.71□□□□□ -1.18
USP48-209ENST00000487880 PLA2G2DQ9UNK4 145 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 PRKAB1Q9Y478 270 aa7.71□□□□□ -1.18
USP48-209ENST00000487880 TCRBV5S2A0A599 114 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 BTBD11A6QL63 1104 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 MAFKO60675 156 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 JMJD7P0C870 316 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 MASP1P48740 699 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 DNM2P50570 870 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 ST5P78524 1137 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 SRSF3P84103 164 aaKnown RBP7.7□□□□□ -1.18
USP48-209ENST00000487880 MESP2Q0VG99 397 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 CRY1Q16526 586 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 MILR1Q7Z6M3 343 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 ANKLE2Q86XL3 938 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 THNSL2Q86YJ6 484 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 MIB1Q86YT6 1006 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 TMX1Q9H3N1 280 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 CATSPERZQ9NTU4 200 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 MYOTQ9UBF9 498 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 ASH2LQ9UBL3 628 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 MBD1Q9UIS9 605 aaPredicted RBP7.7□□□□□ -1.18
USP48-209ENST00000487880 DSEQ9UL01 958 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 PCDHB4Q9Y5E5 795 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 IRS2Q9Y4H2 1338 aa7.7□□□□□ -1.18
USP48-209ENST00000487880 TEX51A0A1B0GUA7 166 aa7.69□□□□□ -1.18
USP48-209ENST00000487880 PAX4O43316 350 aa7.69□□□□□ -1.18
USP48-209ENST00000487880 SEMA7AO75326 666 aa7.69□□□□□ -1.18
USP48-209ENST00000487880 VIL1P09327 827 aaKnown RBP7.69□□□□□ -1.18
USP48-209ENST00000487880 MYCLP1P12525 358 aaPredicted RBP7.69□□□□□ -1.18
USP48-209ENST00000487880 FLT3P36888 993 aa7.69□□□□□ -1.18
USP48-209ENST00000487880 EPHA5P54756 1037 aa7.69□□□□□ -1.18
USP48-209ENST00000487880 JAM2P57087 298 aa7.69□□□□□ -1.18
USP48-209ENST00000487880 ZNF200P98182 395 aaPredicted RBP7.69□□□□□ -1.18
USP48-209ENST00000487880 CDCA2Q69YH5 1023 aaPredicted RBP7.69□□□□□ -1.18
USP48-209ENST00000487880 HHIPL2Q6UWX4 724 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms