RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PDLIM2Q96JY6 352 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 ACCSQ96QU6 501 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 EIF3CQ99613 913 aaKnown RBP17.86■□□□□ 0.45
COL7A1-210ENST00000487017 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-210ENST00000487017 RPAP1Q9BWH6 1393 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-210ENST00000487017 GFPT2O94808 682 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 SESN3P58005 492 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 TAB3Q8N5C8 712 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-210ENST00000487017 MMS19Q96T76 1030 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 CLIC2O15247 247 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 EVI5O60447 810 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 RINT1Q6NUQ1 792 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 LRRIQ4A6NIV6 560 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 PTPREP23469 700 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 YWHAGP61981 247 aaKnown RBP eCLIP17.86■□□□□ 0.45
COL7A1-210ENST00000487017 ANKARQ7Z5J8 1434 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 ERBB3P21860 1342 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 HNRNPDLO14979 420 aaKnown RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 RASGRF1Q13972 1273 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 SH2D4BQ5SQS7 431 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 KSR1Q8IVT5 923 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 ANKFY1Q9P2R3 1169 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 PCDHB4Q9Y5E5 795 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 ADCY10Q96PN6 1610 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 CTNND1O60716 968 aaKnown RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 GBP7Q8N8V2 638 aaPredicted RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 ZNF579Q8NAF0 562 aaKnown RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 HESX1Q9UBX0 185 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 ERVV-1B6SEH8 477 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 SORBS3O60504 671 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 LRRN2O75325 713 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 PDZD4Q76G19 769 aaPredicted RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 COA7Q96BR5 231 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 STK36Q9NRP7 1315 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 NXNQ6DKJ4 435 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 FMR1NBQ8N0W7 255 aaPredicted RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 ANKRD35Q8N283 1001 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 WDR11Q9BZH6 1224 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 SGK1O00141 431 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 INHBAP08476 426 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 NR1D1P20393 614 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 STRBPQ96SI9 672 aaKnown RBP17.85■□□□□ 0.45
COL7A1-210ENST00000487017 SH3GLB2Q9NR46 395 aa17.85■□□□□ 0.45
COL7A1-210ENST00000487017 CYP2D7A0A087X1C5 515 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 SLC7A5Q01650 507 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 TERF2Q15554 542 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 SLFNL1Q499Z3 407 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 TTBK2Q6IQ55 1244 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 ARHGEF18Q6ZSZ5 1173 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 NACC1Q96RE7 527 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 OSBPL5Q9H0X9 879 aaPredicted RBP17.84■□□□□ 0.45
COL7A1-210ENST00000487017 TMEM206Q9H813 350 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 BCORL1Q5H9F3 1711 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 TET3O43151 1660 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 H7C0C1 242 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 ATP5OP48047 213 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 BIRC2Q13490 618 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 SLMAPQ14BN4 828 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 ERFEQ4G0M1 354 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 EMBQ6PCB8 327 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 ANO3Q9BYT9 981 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 M0QZ92 97 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 PLA2G4BP0C869 781 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 SLC16A2P36021 539 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 MCAMP43121 646 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 RNASELQ05823 741 aaKnown RBP17.84■□□□□ 0.45
COL7A1-210ENST00000487017 MAP7D3Q8IWC1 876 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 PLEKHA8P1O95397 391 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 SNX1Q13596 522 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 CDKL2Q92772 493 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 FAM81BQ96LP2 452 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 Q9H521 79 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 NRBP2Q9NSY0 501 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 ANAPC5Q9UJX4 755 aa17.84■□□□□ 0.45
COL7A1-210ENST00000487017 OPHN1O60890 802 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 USP17L8P0C7I0 530 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 GARSP41250 739 aaKnown RBP17.83■□□□□ 0.45
COL7A1-210ENST00000487017 SH3BGRP55822 239 aaPredicted RBP17.83■□□□□ 0.45
COL7A1-210ENST00000487017 GSDMBQ8TAX9 411 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 GJB4Q9NTQ9 266 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 ZDHHC9Q9Y397 364 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 MAD1L1Q9Y6D9 718 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 RFX7Q2KHR2 1363 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 LAMC1P11047 1609 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 MAP3K4Q9Y6R4 1608 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 RPS6KA2Q15349 733 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 USP17L2Q6R6M4 530 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 ADPGKQ9BRR6 497 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 SUGCTQ9HAC7 445 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 WDR19Q8NEZ3 1342 aa17.83■□□□□ 0.45
COL7A1-210ENST00000487017 MEIS1O00470 390 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 RFX6Q8HWS3 928 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 HACE1Q8IYU2 909 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 MED10Q9BTT4 135 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 USP21Q9UK80 565 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 NCAPD2Q15021 1401 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 ARHGAP4P98171 946 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 NEK9Q8TD19 979 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 ABHD10Q9NUJ1 306 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 SEPT10Q9P0V9 454 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms