RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CAND2O75155 1236 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 PDE6AP16499 860 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 GPR19Q15760 415 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 GPR158Q5T848 1215 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 HLA-DQA1Q5Y7H0 255 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 CISD2Q8N5K1 135 aaKnown RBP6.83□□□□□ -1.32
UPF3B-203ENST00000478840 SLC5A5Q92911 643 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 FUBP3Q96I24 572 aaKnown RBP eCLIP6.83□□□□□ -1.32
UPF3B-203ENST00000478840 POLR3GLQ9BT43 218 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 OSBPL1AQ9BXW6 950 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 SMURF1Q9HCE7 757 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 VTA1Q9NP79 307 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 CLDND1Q9NY35 253 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 ZNF180Q9UJW8 692 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 SPO11Q9Y5K1 396 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 X6R8D5 127 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 AMY2AP04746 511 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 AMY2BP19961 511 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 GATA4P43694 442 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 EGR3Q06889 387 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 DDB1Q16531 1140 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 CXorf57Q6NSI4 855 aaKnown RBP6.82□□□□□ -1.32
UPF3B-203ENST00000478840 ZPBP2Q6X784 338 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 C14orf80Q86SX3 495 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 CREG2Q8IUH2 290 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 MAGEB6Q8N7X4 407 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 NLGN2Q8NFZ4 835 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 NETO1Q8TDF5 533 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 LUC7LQ9NQ29 371 aaKnown RBP6.82□□□□□ -1.32
UPF3B-203ENST00000478840 ATG3Q9NT62 314 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 H2AFY2Q9P0M6 372 aaPredicted RBP6.82□□□□□ -1.32
UPF3B-203ENST00000478840 RIPOR2Q9Y4F9 1068 aa6.82□□□□□ -1.32
UPF3B-203ENST00000478840 SLC12A8A0AV02 714 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 GOLGA6CA6NDK9 693 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 GOLGA6BA6NDN3 693 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 WTIPA6NIX2 430 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 TPD52L2O43399 206 aaKnown RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 IGLV1-40P01703 118 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 GOLGA6DP0CG33 693 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 U2AF1L5P0DN76 240 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 RBP3P10745 1247 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 ZSCAN20P17040 1043 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 ATF3P18847 181 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 GRIK1P39086 918 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 CORO7P57737 925 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 U2AF1Q01081 240 aaKnown RBP eCLIP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 TERF2Q15554 542 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 PTPN21Q16825 1174 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 ABCB5Q2M3G0 1257 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 MAP9Q49MG5 647 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 TMEM240Q5SV17 173 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 HDGFL2Q7Z4V5 671 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 WAPLQ7Z5K2 1190 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 RASSF3Q86WH2 238 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 PLD6Q8N2A8 252 aaKnown RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 C1orf162Q8NEQ5 155 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 SHKBP1Q8TBC3 707 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 JPH3Q8WXH2 748 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-203ENST00000478840 TMEM169Q96HH4 297 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 CHAMP1Q96JM3 812 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 GOLGA6AQ9NYA3 693 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 TNFRSF10DQ9UBN6 386 aa6.81□□□□□ -1.32
UPF3B-203ENST00000478840 TRIM75PA6NK02 468 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 H7C1D1 291 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 PEX14O75381 377 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 RPL10P27635 214 aaKnown RBP6.8□□□□□ -1.32
UPF3B-203ENST00000478840 IARSP41252 1262 aaKnown RBP6.8□□□□□ -1.32
UPF3B-203ENST00000478840 JAM2P57087 298 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 SMAD3P84022 425 aaKnown RBP6.8□□□□□ -1.32
UPF3B-203ENST00000478840 SPIRE1Q08AE8 756 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 MLC1Q15049 377 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 SMAD2Q15796 467 aaKnown RBP6.8□□□□□ -1.32
UPF3B-203ENST00000478840 BROXQ5VW32 411 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 CEP68Q76N32 757 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 OTOP3Q7RTS5 596 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 SLC51AQ86UW1 340 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 OSTM1Q86WC4 334 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 CERS3Q8IU89 383 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 RIOX2Q8IUF8 465 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 NOSTRINQ8IVI9 506 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 KCNJ15Q99712 375 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 G6PC3Q9BUM1 346 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 JAM3Q9BX67 310 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 EPB41L1Q9H4G0 881 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 ATP13A1Q9HD20 1204 aa6.8□□□□□ -1.32
UPF3B-203ENST00000478840 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.8□□□□□ -1.32
UPF3B-203ENST00000478840 PNMA8BQ9ULN7 279 aaPredicted RBP6.8□□□□□ -1.32
UPF3B-203ENST00000478840 WASHC2AQ641Q2 1341 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 A0A1W2PQ45 241 aaPredicted RBP6.79□□□□□ -1.32
UPF3B-203ENST00000478840 A0A1W2PQY0 241 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 TCRBV5S4A2TA0A5A2 114 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 FADS2P1A8MWK0 482 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 DVL2O14641 736 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 PPP1R11O60927 126 aaPredicted RBP6.79□□□□□ -1.32
UPF3B-203ENST00000478840 CFBP00751 764 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 FURINP09958 794 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 H2AFB1P0C5Y9 115 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 H2AFB2P0C5Z0 115 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 MYBL2P10244 700 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 GNAT1P11488 350 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms