RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CACTIN-AS1Q8N1I8 211 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 CRACR2BQ8N4Y2 399 aaPredicted RBP8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 MIGA1Q8NAN2 632 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 DNAJC2Q99543 621 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 BCL11AQ9H165 835 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 MUC3BQ9H195 1237 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 AS3MTQ9HBK9 375 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 CPA4Q9UI42 421 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 PALD1Q9ULE6 856 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 AGTPBP1Q9UPW5 1226 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 ADGRA2Q96PE1 1338 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 PDE4DIPQ5VU43 2346 aa8.23□□□□□ -1.09
CCDC88A-213ENST00000476903 DOCK3Q8IZD9 2030 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 LINC01387J3KSC0 135 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 GOLIM4O00461 696 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 WNT11O96014 354 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 ASNSP08243 561 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 CYP2C8P10632 490 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 HOXD10P28358 340 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 CD68P34810 354 aaPredicted RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 GRIK1P39086 918 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 JAG1P78504 1218 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 SPP2Q13103 211 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 SLC9C1Q4G0N8 1177 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 SLC9C2Q5TAH2 1124 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 CCDC84Q86UT8 332 aaPredicted RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 METTL16Q86W50 562 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 HOMEZQ8IX15 550 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 RGL4Q8IZJ4 473 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 CMTR1Q8N1G2 835 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 SMCR8Q8TEV9 937 aaPredicted RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 ARMC5Q96C12 935 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 MYRFLQ96LU7 910 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 CEP41Q9BYV8 373 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 LRRCC1Q9C099 1032 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 ARHGAP39Q9C0H5 1083 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 GINM1Q9NU53 330 aa8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 SAP30BPQ9UHR5 308 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 BAZ2AQ9UIF9 1905 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-213ENST00000476903 BRCA2P51587 3418 aa8.21□□□□□ -1.09
CCDC88A-213ENST00000476903 MKI67P46013 3256 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 PDE6AP16499 860 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 ATP5JP18859 108 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 PSMC4P43686 418 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 FCGRTP55899 365 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 PABPC4Q13310 644 aaKnown RBP eCLIP8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 RRP1BQ14684 758 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 ACAD11Q709F0 780 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 TTC6Q86TZ1 520 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 TREML1Q86YW5 311 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 UTP4Q969X6 686 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 BOLA2Q9H3K6 86 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 DNAJC18Q9H819 358 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 PAG1Q9NWQ8 432 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 PTCH2Q9Y6C5 1203 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 ZNF532Q9HCE3 1301 aa8.21□□□□□ -1.1
CCDC88A-213ENST00000476903 TCRBV5S4A2TA0A5A2 114 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 HMGCS2P54868 508 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 TMEM132AQ24JP5 1023 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 SLC4A8Q2Y0W8 1093 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 TREML2Q5T2D2 321 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 ANKMY2Q8IV38 441 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 GPATCH3Q96I76 525 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 ZNF333Q96JL9 665 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 HAUS7Q99871 368 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 FAM83CQ9BQN1 747 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 RIOK1Q9BRS2 568 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 WDR18Q9BV38 432 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 KRTAP4-2Q9BYR5 136 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 CRNKL1Q9BZJ0 848 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 EHD4Q9H223 541 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 TMOD4Q9NZQ9 345 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 SRRDQ9UH36 339 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 SERPINB13Q9UIV8 391 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 ZBTB21Q9ULJ3 1066 aa8.2□□□□□ -1.1
CCDC88A-213ENST00000476903 C19orf81C9J6K1 198 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 RAD21O60216 631 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 SMARCA5O60264 1052 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 POLR3DP05423 398 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 CTGFP29279 349 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 ADD2P35612 726 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 BACE1P56817 501 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 TRIP4Q15650 581 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 TATDN1Q6P1N9 297 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 TXNDC11Q6PKC3 985 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 CLEC10AQ8IUN9 316 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 FAM20CQ8IXL6 584 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 ANKRD13CQ8N6S4 541 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 SHKBP1Q8TBC3 707 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 RAET1EQ8TD07 263 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 EDC3Q96F86 508 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 RBSNQ9H1K0 784 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 DCTPP1Q9H773 170 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 MYPNQ86TC9 1320 aa8.19□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L10C9JJH3 530 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 GH2P01242 217 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 GCLCP48506 637 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 RRP1P56182 461 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms