RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 JAG1P78504 1218 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 GUCY1B3Q02153 619 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 NONOQ15233 471 aaKnown RBP eCLIP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 CDC37Q16543 378 aaPredicted RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 FOXD4L5Q5VV16 416 aaPredicted RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 WWC2Q6AWC2 1192 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 TTBK2Q6IQ55 1244 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 CATSPERGQ6ZRH7 1159 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 HOMER1Q86YM7 354 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 REXO1Q8N1G1 1221 aaKnown RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 ARRDC4Q8NCT1 418 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 LEO1Q8WVC0 666 aaPredicted RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 FOXD4L4Q8WXT5 416 aaPredicted RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 CDX2Q99626 313 aaPredicted RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 EMILIN3Q9NT22 766 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 LMBRD1Q9NUN5 540 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 HOOK1Q9UJC3 728 aaKnown RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 PPP1R9AQ9ULJ8 1098 aa7.98□□□□□ -1.13
SHQ1-207ENST00000475558 MYO5AQ9Y4I1 1855 aaKnown RBP7.98□□□□□ -1.13
SHQ1-207ENST00000475558 GCOM1H8Y6P7 765 aaPredicted RBP7.97□□□□□ -1.13
SHQ1-207ENST00000475558 SLC26A4O43511 780 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 CUTAO60888 179 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 FLOT1O75955 427 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 HOXC6P09630 235 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 POLR2MP0CAP2 368 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 PTPREP23469 700 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 CMA1P23946 247 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 CNGA1P29973 690 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 SLC16A2P36021 539 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 ME1P48163 572 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 RTP1P59025 263 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 QRICH1Q2TAL8 776 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 FAM83BQ5T0W9 1011 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 WDR78Q5VTH9 848 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 PPP4R3AQ6IN85 833 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 KANK3Q6NY19 840 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 XRRA1Q6P2D8 792 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 MOXD1Q6UVY6 613 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 LBX2Q6XYB7 198 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 HOMEZQ8IX15 550 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 ELOA2Q8IYF1 753 aaPredicted RBP7.97□□□□□ -1.13
SHQ1-207ENST00000475558 KCTD17Q8N5Z5 321 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 LINC00301Q8NCQ3 95 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 MAFAQ8NHW3 353 aaPredicted RBP7.97□□□□□ -1.13
SHQ1-207ENST00000475558 SYMPKQ92797 1274 aaKnown RBP7.97□□□□□ -1.13
SHQ1-207ENST00000475558 KIFC2Q96AC6 838 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 RAB34Q9BZG1 259 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 SEMA6BQ9H3T3 888 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 PRDM6Q9NQX0 595 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 TFIP11Q9UBB9 837 aaKnown RBP7.97□□□□□ -1.13
SHQ1-207ENST00000475558 FBXO40Q9UH90 709 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 ADAMTS5Q9UNA0 930 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 KCNJ14Q9UNX9 436 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 IVNS1ABPQ9Y6Y0 642 aa7.97□□□□□ -1.13
SHQ1-207ENST00000475558 DNAH12Q6ZR08 3092 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 LAMA2P24043 3122 aaKnown RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SPDYE3A6NKU9 549 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 M0R2N6 131 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 MAFGO15525 162 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SLC25A27O95847 323 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 VCAM1P19320 739 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 PRPHP41219 470 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SMAD3P84022 425 aaKnown RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SHHQ15465 462 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SLC39A5Q6ZMH5 540 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 NEK8Q86SG6 692 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SPICE1Q8N0Z3 855 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 KRI1Q8N9T8 703 aaKnown RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 CHST13Q8NET6 341 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 TNFRSF25Q93038 417 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 AK8Q96MA6 479 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 AIFM3Q96NN9 605 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 USP28Q96RU2 1077 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 MPHOSPH6Q99547 160 aaKnown RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 TANGO6Q9C0B7 1094 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 RPAP3Q9H6T3 665 aaPredicted RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SLC38A10Q9HBR0 1119 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 DDX19AQ9NUU7 478 aaKnown RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 FAM13BQ9NYF5 915 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 FLRT1Q9NZU1 646 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 USP25Q9UHP3 1055 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 PCDHA6Q9UN73 950 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 CNPY2Q9Y2B0 182 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 ATP11BQ9Y2G3 1177 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 PCDHA8Q9Y5H6 950 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SRPRBQ9Y5M8 271 aaKnown RBP7.96□□□□□ -1.14
SHQ1-207ENST00000475558 LAMA4Q16363 1823 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 FRMPD3Q5JV73 1810 aa7.96□□□□□ -1.14
SHQ1-207ENST00000475558 SIPA1L1O43166 1804 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 CYP3A7-CYP3A51PA0A087WV96 503 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 hCG_1642624A0A1W2PR95 340 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 KBTBD13C9JR72 458 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 VWA5AO00534 786 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 TBX3O15119 743 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 FIBPO43427 364 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 STRNO43815 780 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 PPFIA3O75145 1194 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 CNMDO75829 334 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 CYP3A7P24462 503 aa7.95□□□□□ -1.14
SHQ1-207ENST00000475558 CYP2C19P33261 490 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms