RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 GPRASP2Q96D09 838 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 VPS11Q9H270 941 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 RBPJLQ9UBG7 517 aa6.04□□□□□ -1.44
CCDC88A-212ENST00000474059 GDF5P43026 501 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 RPL11P62913 178 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 KLF10Q13118 480 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 PPP2R5EQ16537 467 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 TEPPQ6URK8 271 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 CEP68Q76N32 757 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 BTN2A2Q8WVV5 523 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 DTLQ9NZJ0 730 aa6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 ING1Q9UK53 422 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 TIMM13Q9Y5L4 95 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-212ENST00000474059 AMHP03971 560 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 CAPNS1P04632 268 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 LCP1P13796 627 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 NASPP49321 788 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 PPP2CBP62714 309 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 PPP2CAP67775 309 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 SURF1Q15526 300 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 SF1Q15637 639 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 EMC4Q5J8M3 183 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 SPDYAQ5MJ70 313 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 PRAMEF18Q5VWM3 479 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 PALM2Q8IXS6 379 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 RCBTB1Q8NDN9 531 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 APBA2Q99767 749 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 CDIP1Q9H305 208 aa6.02□□□□□ -1.45
CCDC88A-212ENST00000474059 NPEPPSL1A6NEC2 478 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 SCG5P05408 212 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 ZNF143P52747 638 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 NKX3-2P78367 333 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 PRSS53Q2L4Q9 553 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 E4F1Q66K89 784 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 PLEKHH3Q7Z736 793 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 CIR1Q86X95 450 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 KBTBD2Q8IY47 623 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 C1orf159Q96HA4 380 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 SPATA32Q96LK8 384 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 TMEM168Q9H0V1 697 aa6.01□□□□□ -1.45
CCDC88A-212ENST00000474059 CYP1A1P04798 512 aaPredicted RBP6□□□□□ -1.45
CCDC88A-212ENST00000474059 POMZP3Q6PJE2 187 aa6□□□□□ -1.45
CCDC88A-212ENST00000474059 Q8TCH9 128 aa6□□□□□ -1.45
CCDC88A-212ENST00000474059 DIO2Q92813 273 aa6□□□□□ -1.45
CCDC88A-212ENST00000474059 TOE1Q96GM8 510 aaKnown RBP6□□□□□ -1.45
CCDC88A-212ENST00000474059 SLITRK6Q9H5Y7 841 aa6□□□□□ -1.45
CCDC88A-212ENST00000474059 NGRNQ9NPE2 291 aaKnown RBP6□□□□□ -1.45
CCDC88A-212ENST00000474059 FZD7O75084 574 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 CNOT4O95628 575 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 SELENOPP49908 381 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 CRB2Q5IJ48 1285 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 IQCEQ6IPM2 695 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 ZNF227Q86WZ6 799 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 NUDT10Q8NFP7 164 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 NUDT11Q96G61 164 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 TRMT2BQ96GJ1 504 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 TMEM169Q96HH4 297 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 L2HGDHQ9H9P8 463 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 HSPBP1Q9NZL4 362 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 CROTQ9UKG9 612 aa5.99□□□□□ -1.45
CCDC88A-212ENST00000474059 HGSO14964 777 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 KLHL18O94889 574 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 ITGAVP06756 1048 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 RBM10P98175 930 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 NFATC3Q12968 1075 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 KCNAB2Q13303 367 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 ACBD5Q5T8D3 534 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 SLFN13Q68D06 897 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 IGFL4Q6B9Z1 124 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 KLHL36Q8N4N3 616 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 CRACR2BQ8N4Y2 399 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 CLIC6Q96NY7 704 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 ADAM29Q9UKF5 820 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 PCDHB4Q9Y5E5 795 aa5.98□□□□□ -1.45
CCDC88A-212ENST00000474059 B2RBV5 119 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 NOP56O00567 594 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 SCAMP3O14828 347 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 B4GALT4O60513 344 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 ZNF623O75123 536 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 VAMP1P23763 118 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 PHF19Q5T6S3 580 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 STEAP3Q658P3 488 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 TMC5Q6UXY8 1006 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 ARHGEF18Q6ZSZ5 1173 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 TMEM209Q96SK2 561 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 CDK5RAP1Q96SZ6 601 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 TESMINQ9Y4I5 508 aa5.97□□□□□ -1.45
CCDC88A-212ENST00000474059 H7BY64 318 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 MEFVO15553 781 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 FOXS1O43638 330 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 ECI1P42126 302 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 GTF2A2P52657 109 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 GFRA1P56159 465 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 HDLBPQ00341 1268 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 MRM1Q6IN84 353 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 DTX3Q8N9I9 347 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 YIPF4Q9BSR8 244 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 PCDHA2Q9Y5H9 948 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms