RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NSUN6Q8TEA1 469 aaKnown RBP21.58■■□□□ 1.05
SHH-205ENST00000472308 PHOX2BQ99453 314 aa21.58■■□□□ 1.05
SHH-205ENST00000472308 OSBPL7Q9BZF2 842 aa21.58■■□□□ 1.05
SHH-205ENST00000472308 GOLGA8HP0CJ92 632 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 STXBP2Q15833 593 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 SERINC5Q86VE9 423 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 FBXO11Q86XK2 927 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 IWS1Q96ST2 819 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 RMDN3Q96TC7 470 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 NSUN3Q9H649 340 aaKnown RBP21.57■■□□□ 1.04
SHH-205ENST00000472308 ATG2AQ2TAZ0 1938 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 CFAP54Q96N23 3096 aa21.57■■□□□ 1.04
SHH-205ENST00000472308 RSPH10B2B2RC85 870 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 RSPH10BP0C881 870 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 THPOP40225 353 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 EP400NLQ6ZTU2 488 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 TMEM192Q8IY95 271 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 TOP1MTQ969P6 601 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 YME1L1Q96TA2 773 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 UBA5Q9GZZ9 404 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 MAF1Q9H063 256 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 CLDND1Q9NY35 253 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 FAM50BQ9Y247 325 aa21.56■■□□□ 1.04
SHH-205ENST00000472308 FGAP02671 866 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 LAMC2Q13753 1193 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 CDC37Q16543 378 aaPredicted RBP21.55■■□□□ 1.04
SHH-205ENST00000472308 CTC1Q2NKJ3 1217 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 RPAINQ86UA6 219 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 MUTYHQ9UIF7 546 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 MRVI1Q9Y6F6 885 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 MYO7AQ13402 2215 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 ABCB11O95342 1321 aa21.55■■□□□ 1.04
SHH-205ENST00000472308 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.54■■□□□ 1.04
SHH-205ENST00000472308 EIF2AK2P19525 551 aaKnown RBP21.54■■□□□ 1.04
SHH-205ENST00000472308 DLX2Q07687 328 aaPredicted RBP21.54■■□□□ 1.04
SHH-205ENST00000472308 SMAD2Q15796 467 aaKnown RBP21.54■■□□□ 1.04
SHH-205ENST00000472308 GPATCH4Q5T3I0 446 aaKnown RBP21.54■■□□□ 1.04
SHH-205ENST00000472308 DHX37Q8IY37 1157 aaKnown RBP21.54■■□□□ 1.04
SHH-205ENST00000472308 TTC14Q96N46 770 aa21.54■■□□□ 1.04
SHH-205ENST00000472308 TECTAO75443 2155 aa21.54■■□□□ 1.04
SHH-205ENST00000472308 NLRC5Q86WI3 1866 aa21.54■■□□□ 1.04
SHH-205ENST00000472308 EIF3JO75822 258 aaKnown RBP21.53■■□□□ 1.04
SHH-205ENST00000472308 RGS20O76081 388 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 UPP2O95045 317 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 HOXC8P31273 242 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 HSDL1Q3SXM5 330 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 HERC4Q5GLZ8 1057 aaPredicted RBP21.53■■□□□ 1.04
SHH-205ENST00000472308 PRSS33Q8NF86 280 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 PXMP2Q9NR77 195 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 SALL3Q9BXA9 1300 aa21.53■■□□□ 1.04
SHH-205ENST00000472308 SORBS3O60504 671 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 NR3C2P08235 984 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 LINC00271P0C7V0 271 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 HAND2P61296 217 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 CLUL1Q15846 466 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 ARHGEF16Q5VV41 709 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 MYSM1Q5VVJ2 828 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 TBC1D10CQ8IV04 446 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 MIER1Q8N108 512 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 MFSD14AQ96MC6 490 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 C16orf70Q9BSU1 422 aa21.52■■□□□ 1.04
SHH-205ENST00000472308 UPF3BQ9BZI7 483 aaKnown RBP21.52■■□□□ 1.04
SHH-205ENST00000472308 RALGAPA2Q2PPJ7 1873 aa21.52■■□□□ 1.03
SHH-205ENST00000472308 PPFIA4O75335 1185 aa21.51■■□□□ 1.03
SHH-205ENST00000472308 MX1P20591 662 aa21.51■■□□□ 1.03
SHH-205ENST00000472308 HYAL1Q12794 435 aa21.51■■□□□ 1.03
SHH-205ENST00000472308 ADGRF4Q8IZF3 695 aa21.51■■□□□ 1.03
SHH-205ENST00000472308 SEPT8Q92599 483 aa21.51■■□□□ 1.03
SHH-205ENST00000472308 ZMYM6O95789 1325 aa21.51■■□□□ 1.03
SHH-205ENST00000472308 A0A0D9SFI3 127 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 OPLAHO14841 1288 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 MBTPS2O43462 519 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 CTSHP09668 335 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 QRICH1Q2TAL8 776 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 CELF3Q5SZQ8 465 aaKnown RBP21.5■■□□□ 1.03
SHH-205ENST00000472308 MCF2L2Q86YR7 1114 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 RNF135Q8IUD6 432 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 FAM227BQ96M60 508 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 SPATA33Q96N06 139 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 IFIH1Q9BYX4 1025 aaKnown RBP21.5■■□□□ 1.03
SHH-205ENST00000472308 HELLSQ9NRZ9 838 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 RCAN3Q9UKA8 241 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 MYO15AQ9UKN7 3530 aa21.5■■□□□ 1.03
SHH-205ENST00000472308 C5orf67F2Z3F1 127 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 GRM6O15303 877 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 TREHO43280 583 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 TBX10O75333 385 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 SP2Q02086 613 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 IER5LQ5T953 404 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 ATP6V0A1Q93050 837 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 ZKSCAN3Q9BRR0 538 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 NEDD4P46934 1319 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 MYH7BA7E2Y1 1941 aa21.49■■□□□ 1.03
SHH-205ENST00000472308 C17orf102A2RUQ5 167 aa21.48■■□□□ 1.03
SHH-205ENST00000472308 NCK2O43639 380 aa21.48■■□□□ 1.03
SHH-205ENST00000472308 GGPS1O95749 300 aa21.48■■□□□ 1.03
SHH-205ENST00000472308 HSPD1P10809 573 aaKnown RBP21.48■■□□□ 1.03
SHH-205ENST00000472308 UBA1P22314 1058 aaKnown RBP21.48■■□□□ 1.03
SHH-205ENST00000472308 CTNNB1P35222 781 aa21.48■■□□□ 1.03
SHH-205ENST00000472308 GTF2F1P35269 517 aaKnown RBP eCLIP21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms