RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MED24O75448 989 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 ZC2HC1CQ53FD0 456 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 ZKSCAN4Q969J2 545 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 DHX36Q9H2U1 1008 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 USO1O60763 962 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 ACTN1P12814 892 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 KIF5AQ12840 1032 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 HHIPL2Q6UWX4 724 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 ZCCHC17Q9NP64 241 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 CGNQ9P2M7 1197 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 USP20Q9Y2K6 914 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 NHSL1Q5SYE7 1610 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 KCNA1Q09470 495 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 COASYQ13057 564 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 GALNT17Q6IS24 598 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 ADAT2Q7Z6V5 191 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 KIAA0895Q8NCT3 520 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 PNMA5Q96PV4 448 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 MLXIPQ9HAP2 919 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 GAKO14976 1311 aa15.22■□□□□ 0.03
CCDC88A-211ENST00000471947 NMT1P30419 496 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 TAF3Q5VWG9 929 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 NYAP1Q6ZVC0 841 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 GSPT2Q8IYD1 628 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 MMTAG2Q9BU76 263 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC94Q9BW85 323 aaPredicted RBP15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 MYH3P11055 1940 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 GOLGA8IPA6NC78 632 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 GOLGA8JA6NMD2 632 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 TMEM110-MUSTN1A8MSY1 372 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 GCOM1H8Y6P7 765 aaPredicted RBP15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 POLR2MP0CAP2 368 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 INPP5BP32019 993 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 CXCL9Q07325 125 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 FAM114A1Q8IWE2 563 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 DYDC2Q96IM9 177 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 PAGR1Q9BTK6 254 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 SEMA6BQ9H3T3 888 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 RIOX1Q9H6W3 641 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 RIC8AQ9NPQ8 531 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 PACSIN2Q9UNF0 486 aaPredicted RBP15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 FAM86B1E9PN63 330 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 ZNF185O15231 689 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 FAM86B2P0C5J1 330 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 POLD1P28340 1107 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 ZFYVE27Q5T4F4 411 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 CERS3Q8IU89 383 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 RGS22Q8NE09 1264 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 RAD54LQ92698 747 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC127Q96BQ5 260 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 FAM84AQ96KN4 292 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 ZDHHC15Q96MV8 337 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 NDST4Q9H3R1 872 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 SUGCTQ9HAC7 445 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 EMILIN3Q9NT22 766 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 EHD2Q9NZN4 543 aa15.21■□□□□ 0.03
CCDC88A-211ENST00000471947 UBR2Q8IWV8 1755 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 NCK2O43639 380 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CYLC1P35663 651 aaPredicted RBP15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CDR1P51861 262 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 TMEM132AQ24JP5 1023 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 DNAJC21Q5F1R6 531 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 PHLDB2Q86SQ0 1253 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 FAM133AQ8N9E0 248 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 BLOC1S4Q9NUP1 217 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 BACH1O14867 736 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 LRRN2O75325 713 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 ABCB4P21439 1286 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 EIF4A3P38919 411 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 TMTC1Q8IUR5 882 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 ZNF577Q9BSK1 485 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 ZMYND15Q9H091 742 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CHORDC1Q9UHD1 332 aaPredicted RBP15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 HYOU1Q9Y4L1 999 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 SHANK3Q9BYB0 1731 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CRYBG1Q9Y4K1 1723 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 EPHB6O15197 1021 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 NDUFA10O95299 355 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 MOCS3O95396 460 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 MAGEA1P43355 309 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CIAPIN1Q6FI81 312 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 SH3RF1Q7Z6J0 888 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CCSER1Q9C0I3 900 aa15.2■□□□□ 0.02
CCDC88A-211ENST00000471947 CTAGE15A4D2H0 777 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 CTAGE8P0CG41 777 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 DNM2P50570 870 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 CTAGE6Q86UF2 777 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 CTAGE4Q8IX94 777 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 FAM212AQ96EL1 285 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 IFIH1Q9BYX4 1025 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 ADAMTS1Q9UHI8 967 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 RABGAP1Q9Y3P9 1069 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 CETN3O15182 167 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 MYBP10242 640 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 GFPT1Q06210 699 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 KIAA1755Q5JYT7 1200 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 HAS1Q92839 578 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 GOPCQ9HD26 462 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 ARHGEF35A5YM69 484 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 ODR4Q5SWX8 454 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms