RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ORC2Q13416 577 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 ARHGEF16Q5VV41 709 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 OTOP1Q7RTM1 612 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 IGSF22Q8N9C0 903 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 ENGASEQ8NFI3 743 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 PCYT2Q99447 389 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 TINF2Q9BSI4 451 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 WRAP73Q9P2S5 460 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 DDX25Q9UHL0 483 aaKnown RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 DDX41Q9UJV9 622 aaKnown RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 HPSEQ9Y251 543 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 CTDP1Q9Y5B0 961 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 SRPRBQ9Y5M8 271 aaKnown RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 ELP1O95163 1332 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 PP2D1A8MPX8 630 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 TNPO2O14787 897 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 TBX3O15119 743 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 CCNT1O60563 726 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 FKTNO75072 461 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 ATG7O95352 703 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 SPATA31C1P0DKV0 1188 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 GCFC2P16383 781 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 CYP2B6P20813 491 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 MARCKSP29966 332 aaPredicted RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 MCM4P33991 863 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 PRPHP41219 470 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 NKX3-2P78367 333 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 CEBPZQ03701 1054 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 PRR16Q569H4 304 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 MSL3Q8N5Y2 521 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 COPS5Q92905 334 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 MTRQ99707 1265 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 APBA2Q99767 749 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 BRMS1Q9HCU9 246 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 GNEQ9Y223 722 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 SYNGAP1Q96PV0 1343 aa11.23□□□□□ -0.61
SF3A1-207ENST00000471342 ZNFX1Q9P2E3 1918 aaKnown RBP11.23□□□□□ -0.61
SF3A1-207ENST00000471342 IGKV6D-21A0A0A0MT36 114 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 MGAMO43451 1857 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 NEMFO60524 1076 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 CYBAP13498 195 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 CDC25AP30304 524 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 FXR2P51116 673 aaKnown RBP eCLIP11.22□□□□□ -0.615e-6■■□□□ 12.9
SF3A1-207ENST00000471342 FCGRTP55899 365 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 SNW1Q13573 536 aaKnown RBP11.22□□□□□ -0.61
SF3A1-207ENST00000471342 NAALADL2Q58DX5 795 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 GJC2Q5T442 439 aaPredicted RBP11.22□□□□□ -0.61
SF3A1-207ENST00000471342 ARL6IP4Q66PJ3 421 aaKnown RBP11.22□□□□□ -0.61
SF3A1-207ENST00000471342 PLA2G4DQ86XP0 818 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 FBXO16Q8IX29 292 aaPredicted RBP11.22□□□□□ -0.61
SF3A1-207ENST00000471342 GPT2Q8TD30 523 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 SOCS4Q8WXH5 440 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 GPRASP2Q96D09 838 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 PNMA5Q96PV4 448 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 HSD17B14Q9BPX1 270 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 SENP7Q9BQF6 1050 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 CSRNP2Q9H175 543 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 MYH15Q9Y2K3 1946 aa11.22□□□□□ -0.61
SF3A1-207ENST00000471342 GSTTP1A0A1W2PQM5 241 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 SPTLC2O15270 562 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 STAM2O75886 525 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 OR52Z1P0C646 297 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 MYCLP12524 364 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 HOXD8P13378 290 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 SMPD1P17405 629 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 LIG1P18858 919 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 ATP4AP20648 1035 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 UBA1P22314 1058 aaKnown RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 CCND2P30279 289 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 RGS2P41220 211 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 ARHGAP1Q07960 439 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 CACNB2Q08289 660 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 PPP2R5CQ13362 524 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 STXBP2Q15833 593 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 E2F4Q16254 413 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 LY6KQ17RY6 165 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 SPECC1Q5M775 1068 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 WDR78Q5VTH9 848 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 CCSAPQ6IQ19 270 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 EEPD1Q7L9B9 569 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 KCNK18Q7Z418 384 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 ZNF579Q8NAF0 562 aaKnown RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 LENG1Q96BZ8 264 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 EPSTI1Q96J88 318 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 FAM20AQ96MK3 541 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 ZNF396Q96N95 335 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-207ENST00000471342 CEP89Q96ST8 783 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 UNC45AQ9H3U1 944 aa11.21□□□□□ -0.61
SF3A1-207ENST00000471342 NFASCO94856 1347 aa11.2□□□□□ -0.62
SF3A1-207ENST00000471342 A0A1W2PQ27 194 aa11.2□□□□□ -0.62
SF3A1-207ENST00000471342 A0A1W2PQ64 194 aa11.2□□□□□ -0.62
SF3A1-207ENST00000471342 A0A1W2PQD8 194 aa11.2□□□□□ -0.62
SF3A1-207ENST00000471342 IPO5O00410 1097 aaKnown RBP11.2□□□□□ -0.62
SF3A1-207ENST00000471342 FIBPO43427 364 aa11.2□□□□□ -0.62
SF3A1-207ENST00000471342 FARP2O94887 1054 aaPredicted RBP11.2□□□□□ -0.62
SF3A1-207ENST00000471342 HSPA1AP0DMV8 641 aaKnown RBP11.2□□□□□ -0.62
SF3A1-207ENST00000471342 HSPA1BP0DMV9 641 aaKnown RBP11.2□□□□□ -0.62
SF3A1-207ENST00000471342 ELNP15502 786 aa11.2□□□□□ -0.62
SF3A1-207ENST00000471342 ADCYAP1R1P41586 468 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms