RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 DUSP9Q99956 384 aaKnown RBP8.5□□□□□ -1.05
COL6A3-208ENST00000468792 NUP58Q9BVL2 599 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 MAGEC2Q9UBF1 373 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-208ENST00000468792 IGLV3-22A0A075B6J6 115 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 FAM86B1E9PN63 330 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 MEIS1O00470 390 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 TEX33O43247 280 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 RAD21O60216 631 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 MFAP3LO75121 409 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 FAM86B2P0C5J1 330 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 CCT6AP40227 531 aaKnown RBP8.49□□□□□ -1.05
COL6A3-208ENST00000468792 SLC12A3P55017 1021 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 PPP2R5CQ13362 524 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 MCM6Q14566 821 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 KIF4BQ2VIQ3 1234 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 B3GNT9Q6UX72 402 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 KRT26Q7Z3Y9 468 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 TMTC1Q8IUR5 882 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 APOBEC3FQ8IUX4 373 aaKnown RBP8.49□□□□□ -1.05
COL6A3-208ENST00000468792 CCDC65Q8IXS2 484 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 ZC3H3Q8IXZ2 948 aaKnown RBP8.49□□□□□ -1.05
COL6A3-208ENST00000468792 CSGALNACT2Q8N6G5 542 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 SYT2Q8N9I0 419 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-208ENST00000468792 KIF18AQ8NI77 898 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 DDX12PQ92771 950 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 SLC5A5Q92911 643 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 PPP1R13BQ96KQ4 1090 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 TRIM47Q96LD4 638 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 C12orf42Q96LP6 360 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 ERGIC2Q96RQ1 377 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 NUDT12Q9BQG2 462 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 SRRTQ9BXP5 876 aaKnown RBP8.49□□□□□ -1.05
COL6A3-208ENST00000468792 TUFT1Q9NNX1 390 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 KCND2Q9NZV8 630 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 VAV3Q9UKW4 847 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 DNM3Q9UQ16 869 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 FRMPD4Q14CM0 1322 aa8.49□□□□□ -1.05
COL6A3-208ENST00000468792 UQCRHLA0A096LP55 91 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 A0A1W2PQJ5 194 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MSH4O15457 936 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PSMD10O75832 226 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 GNA14O95837 355 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 GYPCP04921 128 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 UQCRHP07919 91 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PLA2G4BP0C869 781 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 SPATA31C1P0DKV0 1188 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CYP11B2P19099 503 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 GMPSP49915 693 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PMS1P54277 932 aaKnown RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 OAZ1P54368 228 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MARSP56192 900 aaKnown RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ETF1P62495 437 aaKnown RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CDK17Q00537 523 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 RBL2Q08999 1139 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ECM1Q16610 540 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 USH1GQ495M9 461 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ZCWPW2Q504Y3 356 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CEP55Q53EZ4 464 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PRR16Q569H4 304 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ANKRD40Q6AI12 368 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 XRRA1Q6P2D8 792 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ZNF662Q6ZS27 426 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MIGA2Q7L4E1 593 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 OTOP1Q7RTM1 612 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 KCNK18Q7Z418 384 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MTERF4Q7Z6M4 381 aaKnown RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 LDHDQ86WU2 507 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CATSPER3Q86XQ3 398 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 REXO1L1PQ8IX06 675 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MICALL2Q8IY33 904 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MYOCDQ8IZQ8 938 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 SPICE1Q8N0Z3 855 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 MB21D1Q8N884 522 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 NEK9Q8TD19 979 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 C16orf45Q96MC5 204 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CEP63Q96MT8 703 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PLIN2Q99541 437 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 RIT2Q99578 217 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 HSD17B14Q9BPX1 270 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 SLF1Q9BQI6 1058 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 TUBGCP2Q9BSJ2 902 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ZNF341Q9BYN7 854 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 WDR11Q9BZH6 1224 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 EDEM3Q9BZQ6 932 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 SEMA6BQ9H3T3 888 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 L2HGDHQ9H9P8 463 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 SLC38A10Q9HBR0 1119 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CNOT7Q9UIV1 285 aaKnown RBP8.48□□□□□ -1.05
COL6A3-208ENST00000468792 CAPN11Q9UMQ6 739 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 KIAA1024Q9UPX6 916 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PCDHA2Q9Y5H9 948 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 ZNF536O15090 1300 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 PHLPP2Q6ZVD8 1323 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 RPTORQ8N122 1335 aa8.48□□□□□ -1.05
COL6A3-208ENST00000468792 USP27XA6NNY8 438 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 C19orf81C9J6K1 198 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 MED24O75448 989 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 EYA4O95677 639 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 FCER1AP12319 257 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 ZNF76P36508 570 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms