RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 PLIN2Q99541 437 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 CYP39A1Q9NYL5 469 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 RBPJLQ9UBG7 517 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 USP25Q9UHP3 1055 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 KLRC4O43908 158 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 PSMD10O75832 226 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 NCAPHQ15003 741 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 Q3C1V9 767 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 MCF2L2Q86YR7 1114 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 IQUBQ8NA54 791 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 FAM200AQ8TCP9 573 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 SLC5A5Q92911 643 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 TEX13BQ9BXU2 312 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 UBIAD1Q9Y5Z9 338 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 EML1O00423 815 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 DHX15O43143 795 aaKnown RBP9.3□□□□□ -0.92
BRCA1-208ENST00000468300 SPATA31C1P0DKV0 1188 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 AFMP43652 599 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 BAATQ14032 418 aaPredicted RBP9.3□□□□□ -0.92
BRCA1-208ENST00000468300 PCNX4Q63HM2 1172 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 ZNF408Q9H9D4 720 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 A1CFQ9NQ94 594 aaKnown RBP9.3□□□□□ -0.92
BRCA1-208ENST00000468300 PXMP2Q9NR77 195 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 LRWD1Q9UFC0 647 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 PCDHA12Q9UN75 941 aa9.3□□□□□ -0.92
BRCA1-208ENST00000468300 RGS20O76081 388 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 HERVK_113P62684 666 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 FKBP1BP68106 108 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 FSTL1Q12841 308 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 CEP55Q53EZ4 464 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 RNF207Q6ZRF8 634 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 RINLQ6ZS11 566 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 OTOP1Q7RTM1 612 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 PDLIM2Q96JY6 352 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 BPIFA3Q9BQP9 254 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 MXRA8Q9BRK3 442 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 WDR11Q9BZH6 1224 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 BLZF1Q9H2G9 400 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 GBA2Q9HCG7 927 aaPredicted RBP9.29□□□□□ -0.92
BRCA1-208ENST00000468300 STK24Q9Y6E0 443 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 ZNFX1Q9P2E3 1918 aaKnown RBP9.29□□□□□ -0.92
BRCA1-208ENST00000468300 MED24O75448 989 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 CD44P16070 742 aaKnown RBP9.29□□□□□ -0.92
BRCA1-208ENST00000468300 RIOX2Q8IUF8 465 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 FAM20AQ96MK3 541 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 PTPN18Q99952 460 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 PDCD2LQ9BRP1 358 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 PASKQ96RG2 1323 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 CELF2O95319 508 aaKnown RBP9.29□□□□□ -0.92
BRCA1-208ENST00000468300 BCRP11274 1271 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 UBA7P41226 1012 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 ZNF165P49910 485 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 UVSSAQ2YD98 709 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 RRAGBQ5VZM2 374 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 KANK3Q6NY19 840 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 SLFN12Q8IYM2 578 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 SLC10A4Q96EP9 437 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 FGD4Q96M96 766 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 PNMA2Q9UL42 364 aa9.29□□□□□ -0.92
BRCA1-208ENST00000468300 STAT6P42226 847 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 ITGB3BPQ13352 177 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-208ENST00000468300 PPP2R5CQ13362 524 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 TKFCQ3LXA3 575 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 APBB1IPQ7Z5R6 666 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-208ENST00000468300 BRI3BPQ8WY22 251 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 PPP1R9BQ96SB3 815 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 SPATC1LQ9H0A9 340 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 ANO10Q9NW15 660 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 GTPBP6O43824 516 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-208ENST00000468300 PSEN1P49768 467 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 SNAPC2Q13487 334 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 DNTTIP2Q5QJE6 756 aaKnown RBP9.28□□□□□ -0.92
BRCA1-208ENST00000468300 NIPA1Q7RTP0 329 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 CATSPER3Q86XQ3 398 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 EGFL6Q8IUX8 553 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 CEP57L1Q8IYX8 460 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 MB21D1Q8N884 522 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 MOV10L1Q9BXT6 1211 aaKnown RBP9.28□□□□□ -0.92
BRCA1-208ENST00000468300 ACAD9Q9H845 621 aa9.28□□□□□ -0.92
BRCA1-208ENST00000468300 WRAP73Q9P2S5 460 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-208ENST00000468300 PLXNB2O15031 1838 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 PCNTO95613 3336 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 EIF2AK2P19525 551 aaKnown RBP9.27□□□□□ -0.92
BRCA1-208ENST00000468300 SPRYD7Q5W111 196 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 NSMFQ6X4W1 530 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 FASTKD5Q7L8L6 764 aaKnown RBP9.27□□□□□ -0.92
BRCA1-208ENST00000468300 VSIG10LQ86VR7 867 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 PLA2G4DQ86XP0 818 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 RMDN3Q96TC7 470 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 HSD17B14Q9BPX1 270 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 PYM1Q9BRP8 204 aaKnown RBP9.27□□□□□ -0.92
BRCA1-208ENST00000468300 MAF1Q9H063 256 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 JADE2Q9NQC1 790 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 KCNH7Q9NS40 1196 aa9.27□□□□□ -0.92
BRCA1-208ENST00000468300 PPP1R3GB7ZBB8 358 aa9.27□□□□□ -0.93
BRCA1-208ENST00000468300 BTBD19C9JJ37 291 aa9.27□□□□□ -0.93
BRCA1-208ENST00000468300 ATP9AO75110 1047 aa9.27□□□□□ -0.93
BRCA1-208ENST00000468300 CYP2C8P10632 490 aa9.27□□□□□ -0.93
BRCA1-208ENST00000468300 PSMC6P62333 389 aa9.27□□□□□ -0.93
BRCA1-208ENST00000468300 CNTN2Q02246 1040 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms