RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 BLIDQ8IZY5 108 aa8.82□□□□□ -1
USP4-207ENST00000462673 NSUN7Q8NE18 718 aaKnown RBP8.82□□□□□ -1
USP4-207ENST00000462673 TBC1D5Q92609 795 aa8.82□□□□□ -1
USP4-207ENST00000462673 DEFB118Q96PH6 123 aa8.82□□□□□ -1
USP4-207ENST00000462673 PDCD2LQ9BRP1 358 aa8.82□□□□□ -1
USP4-207ENST00000462673 SEZ6LQ9BYH1 1024 aa8.82□□□□□ -1
USP4-207ENST00000462673 WDR11Q9BZH6 1224 aa8.82□□□□□ -1
USP4-207ENST00000462673 PAK6Q9NQU5 681 aaPredicted RBP8.82□□□□□ -1
USP4-207ENST00000462673 FLRT1Q9NZU1 646 aa8.82□□□□□ -1
USP4-207ENST00000462673 VPS54Q9P1Q0 977 aa8.82□□□□□ -1
USP4-207ENST00000462673 TCEAL9Q9UHQ7 104 aa8.82□□□□□ -1
USP4-207ENST00000462673 KBTBD13C9JR72 458 aa8.81□□□□□ -1
USP4-207ENST00000462673 KIF20AO95235 890 aa8.81□□□□□ -1
USP4-207ENST00000462673 IGHA2P01877 340 aa8.81□□□□□ -1
USP4-207ENST00000462673 ZNF865P0CJ78 1059 aaPredicted RBP8.81□□□□□ -1
USP4-207ENST00000462673 TXNP10599 105 aaKnown RBP8.81□□□□□ -1
USP4-207ENST00000462673 CYBAP13498 195 aa8.81□□□□□ -1
USP4-207ENST00000462673 CPT1AP50416 773 aa8.81□□□□□ -1
USP4-207ENST00000462673 CAP1Q01518 475 aa8.81□□□□□ -1
USP4-207ENST00000462673 LAMC2Q13753 1193 aa8.81□□□□□ -1
USP4-207ENST00000462673 NONOQ15233 471 aaKnown RBP eCLIP8.81□□□□□ -1
USP4-207ENST00000462673 SLC35G1Q2M3R5 365 aa8.81□□□□□ -1
USP4-207ENST00000462673 CCDC144BQ3MJ40 725 aa8.81□□□□□ -1
USP4-207ENST00000462673 DUSP28Q4G0W2 176 aa8.81□□□□□ -1
USP4-207ENST00000462673 SEPT14Q6ZU15 432 aa8.81□□□□□ -1
USP4-207ENST00000462673 DAGLBQ8NCG7 672 aa8.81□□□□□ -1
USP4-207ENST00000462673 U2AF1L4Q8WU68 220 aaKnown RBP8.81□□□□□ -1
USP4-207ENST00000462673 GPRASP2Q96D09 838 aa8.81□□□□□ -1
USP4-207ENST00000462673 TSEN34Q9BSV6 310 aaKnown RBP8.81□□□□□ -1
USP4-207ENST00000462673 PHF20Q9BVI0 1012 aa8.81□□□□□ -1
USP4-207ENST00000462673 UNC93B1Q9H1C4 597 aa8.81□□□□□ -1
USP4-207ENST00000462673 MLXIPQ9HAP2 919 aa8.81□□□□□ -1
USP4-207ENST00000462673 XPNPEP3Q9NQH7 507 aa8.81□□□□□ -1
USP4-207ENST00000462673 ATP6V1DQ9Y5K8 247 aa8.81□□□□□ -1
USP4-207ENST00000462673 MRVI1Q9Y6F6 885 aa8.81□□□□□ -1
USP4-207ENST00000462673 ZNF236Q9UL36 1845 aa8.81□□□□□ -1
USP4-207ENST00000462673 MYH6P13533 1939 aa8.81□□□□□ -1
USP4-207ENST00000462673 ZNFX1Q9P2E3 1918 aaKnown RBP8.81□□□□□ -1
USP4-207ENST00000462673 PLXNB2O15031 1838 aa8.8□□□□□ -1
USP4-207ENST00000462673 RBM47A0AV96 593 aaKnown RBP8.8□□□□□ -1
USP4-207ENST00000462673 MOXD2PA6NHM9 499 aa8.8□□□□□ -1
USP4-207ENST00000462673 OPLAHO14841 1288 aa8.8□□□□□ -1
USP4-207ENST00000462673 FIBPO43427 364 aa8.8□□□□□ -1
USP4-207ENST00000462673 MARCH6O60337 910 aa8.8□□□□□ -1
USP4-207ENST00000462673 CABYRO75952 493 aa8.8□□□□□ -1
USP4-207ENST00000462673 CTDNEP1O95476 244 aa8.8□□□□□ -1
USP4-207ENST00000462673 MYCP01106 439 aaPredicted RBP8.8□□□□□ -1
USP4-207ENST00000462673 CYP3A4P08684 503 aa8.8□□□□□ -1
USP4-207ENST00000462673 CCND3P30281 292 aaPredicted RBP8.8□□□□□ -1
USP4-207ENST00000462673 CLK2P49760 499 aaKnown RBP8.8□□□□□ -1
USP4-207ENST00000462673 SETQ01105 290 aaPredicted RBP8.8□□□□□ -1
USP4-207ENST00000462673 MTMR1Q13613 665 aa8.8□□□□□ -1
USP4-207ENST00000462673 NOLC1Q14978 699 aaKnown RBP eCLIP8.8□□□□□ -1
USP4-207ENST00000462673 SYCP1Q15431 976 aa8.8□□□□□ -1
USP4-207ENST00000462673 PRAMEF19Q5SWL8 479 aa8.8□□□□□ -1
USP4-207ENST00000462673 JAKMIP3Q5VZ66 844 aa8.8□□□□□ -1
USP4-207ENST00000462673 LARP1BQ659C4 914 aaKnown RBP8.8□□□□□ -1
USP4-207ENST00000462673 EEPD1Q7L9B9 569 aa8.8□□□□□ -1
USP4-207ENST00000462673 NIPA1Q7RTP0 329 aa8.8□□□□□ -1
USP4-207ENST00000462673 NECAB2Q7Z6G3 386 aa8.8□□□□□ -1
USP4-207ENST00000462673 DHX37Q8IY37 1157 aaKnown RBP8.8□□□□□ -1
USP4-207ENST00000462673 FBXO18Q8NFZ0 1043 aa8.8□□□□□ -1
USP4-207ENST00000462673 ARID3AQ99856 593 aa8.8□□□□□ -1
USP4-207ENST00000462673 SENP7Q9BQF6 1050 aa8.8□□□□□ -1
USP4-207ENST00000462673 ANO3Q9BYT9 981 aa8.8□□□□□ -1
USP4-207ENST00000462673 FOXP1Q9H334 677 aaPredicted RBP8.8□□□□□ -1
USP4-207ENST00000462673 USP25Q9UHP3 1055 aa8.8□□□□□ -1
USP4-207ENST00000462673 OGDHLQ9ULD0 1010 aa8.8□□□□□ -1
USP4-207ENST00000462673 DNM1LO00429 736 aa8.79□□□□□ -1
USP4-207ENST00000462673 DYNC1LI2O43237 492 aaPredicted RBP8.79□□□□□ -1
USP4-207ENST00000462673 PPFIA4O75335 1185 aa8.79□□□□□ -1
USP4-207ENST00000462673 LARGE1O95461 756 aa8.79□□□□□ -1
USP4-207ENST00000462673 GH1P01241 217 aa8.79□□□□□ -1
USP4-207ENST00000462673 MMP1P03956 469 aa8.79□□□□□ -1
USP4-207ENST00000462673 MYCNP04198 464 aaPredicted RBP8.79□□□□□ -1
USP4-207ENST00000462673 FDPSP14324 419 aaKnown RBP8.79□□□□□ -1
USP4-207ENST00000462673 GCFC2P16383 781 aaKnown RBP8.79□□□□□ -1
USP4-207ENST00000462673 GJB2P29033 226 aa8.79□□□□□ -1
USP4-207ENST00000462673 ICAM3P32942 547 aa8.79□□□□□ -1
USP4-207ENST00000462673 SREBF1P36956 1147 aa8.79□□□□□ -1
USP4-207ENST00000462673 UBE2HP62256 183 aa8.79□□□□□ -1
USP4-207ENST00000462673 MTFR1Q15390 333 aa8.79□□□□□ -1
USP4-207ENST00000462673 UBE2SQ16763 222 aa8.79□□□□□ -1
USP4-207ENST00000462673 CEP55Q53EZ4 464 aa8.79□□□□□ -1
USP4-207ENST00000462673 GNASQ5JWF2 1037 aa8.79□□□□□ -1
USP4-207ENST00000462673 FOXD4L5Q5VV16 416 aaPredicted RBP8.79□□□□□ -1
USP4-207ENST00000462673 TAF3Q5VWG9 929 aa8.79□□□□□ -1
USP4-207ENST00000462673 LHX8Q68G74 356 aa8.79□□□□□ -1
USP4-207ENST00000462673 TAPT1Q6NXT6 567 aa8.79□□□□□ -1
USP4-207ENST00000462673 MOXD1Q6UVY6 613 aa8.79□□□□□ -1
USP4-207ENST00000462673 PDCL2Q8N4E4 241 aa8.79□□□□□ -1
USP4-207ENST00000462673 FOXD4L4Q8WXT5 416 aaPredicted RBP8.79□□□□□ -1
USP4-207ENST00000462673 VTI1AQ96AJ9 217 aa8.79□□□□□ -1
USP4-207ENST00000462673 MXRA8Q9BRK3 442 aa8.79□□□□□ -1
USP4-207ENST00000462673 SDF4Q9BRK5 362 aa8.79□□□□□ -1
USP4-207ENST00000462673 HTATIP2Q9BUP3 242 aa8.79□□□□□ -1
USP4-207ENST00000462673 CRISPLD2Q9H0B8 497 aa8.79□□□□□ -1
USP4-207ENST00000462673 JADE2Q9NQC1 790 aa8.79□□□□□ -1
USP4-207ENST00000462673 TBC1D22BQ9NU19 505 aa8.79□□□□□ -1
USP4-207ENST00000462673 POLR3EQ9NVU0 708 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms