RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 MAPK8IP1Q9UQF2 711 aa5.73□□□□□ -1.49
CSMD3-205ENST00000462254 PTPRCP08575 1304 aa5.73□□□□□ -1.49
CSMD3-205ENST00000462254 GFRA2O00451 464 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 TSPAN6O43657 245 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 IGLV1-40P01703 118 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 A1BGP04217 495 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 CYP19A1P11511 503 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-205ENST00000462254 MYL6BP14649 208 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 APOBRQ0VD83 1088 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 HDAC1Q13547 482 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-205ENST00000462254 HLTFQ14527 1009 aaKnown RBP eCLIP5.72□□□□□ -1.49
CSMD3-205ENST00000462254 LONRF3Q496Y0 759 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 WIPI1Q5MNZ9 446 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-205ENST00000462254 PAOXQ6QHF9 649 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 CYFIP1Q7L576 1253 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 SLITRK4Q8IW52 837 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 RAVER1Q8IY67 606 aaKnown RBP5.72□□□□□ -1.49
CSMD3-205ENST00000462254 FBXL6Q8N531 539 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 TMEM57Q8N5G2 664 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 LINC00116Q8NCU8 138 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 RNF214Q8ND24 703 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 EXOC6Q8TAG9 804 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 ARHGAP45Q92619 1136 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 GATA6Q92908 595 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 NKD1Q969G9 470 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 ISL2Q96A47 359 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 ELMO3Q96BJ8 720 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 PIDD1Q9HB75 910 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 C1GALT1Q9NS00 363 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 UBP1Q9NZI7 540 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 ZBTB1Q9Y2K1 713 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 TAF1P21675 1872 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 CACNA1SQ13698 1873 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 A0A1B0GUL6 1792 aa5.72□□□□□ -1.49
CSMD3-205ENST00000462254 PRAMEF27A3QJZ7 478 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 IPO8O15397 1037 aaKnown RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 MAFGO15525 162 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 ALDH1L1O75891 902 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 F13A1P00488 732 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 POU3F3P20264 500 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 CNGA1P29973 690 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 CRKLP46109 303 aaKnown RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 GIPRP48546 466 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 EIF6P56537 245 aaKnown RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 LMNB2Q03252 620 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 MTERF2Q49AM1 385 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 ZBTB37Q5TC79 503 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 TTLL7Q6ZT98 887 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 HDXQ7Z353 690 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 WDR75Q8IWA0 830 aaKnown RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 SAMD3Q8N6K7 520 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 FAM169BQ8N8A8 192 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 OR6P1Q8NGX9 317 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 XAGE3Q8WTP9 111 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 CHAC2Q8WUX2 184 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 SLC39A13Q96H72 371 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 DBNDD2Q9BQY9 259 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 YIPF2Q9BWQ6 316 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 TEX13AQ9BXU3 409 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 API5Q9BZZ5 524 aaKnown RBP5.71□□□□□ -1.5
CSMD3-205ENST00000462254 HYPKQ9NX55 129 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 PTCH2Q9Y6C5 1203 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 ATP10DQ9P241 1426 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 ANKRD31Q8N7Z5 1873 aa5.71□□□□□ -1.5
CSMD3-205ENST00000462254 FAM221AA4D161 298 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 PI4KAP2A4QPH2 592 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 ASMTLO95671 621 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 F13BP05160 661 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 KRT18P05783 430 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 STAT3P40763 770 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 AIMP1Q12904 312 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 CDK5R2Q13319 367 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 MAP7Q14244 749 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 MVPQ14764 893 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 FXNQ16595 210 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 TM4SF20Q53R12 229 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 ZFYVE27Q5T4F4 411 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 INTS3Q68E01 1043 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 INTS5Q6P9B9 1019 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 CCDC81Q6ZN84 652 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 COPS6Q7L5N1 327 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 C11orf96Q7Z7L8 435 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 THNSL2Q86YJ6 484 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 ZDHHC13Q8IUH4 622 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 FTSJ3Q8IY81 847 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 NME8Q8N427 588 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 PI4KAP1Q8N8J0 262 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 GOLM1Q8NBJ4 401 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 FBXO27Q8NI29 283 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 SHKBP1Q8TBC3 707 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 TBC1D32Q96NH3 1257 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 SSU72Q9NP77 194 aaKnown RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 ST7Q9NRC1 585 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 PICK1Q9NRD5 415 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 CCNL1Q9UK58 526 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-205ENST00000462254 NRXN2Q9P2S2 1712 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 CNTNAP4Q9C0A0 1308 aa5.7□□□□□ -1.5
CSMD3-205ENST00000462254 COL15A1P39059 1388 aa5.69□□□□□ -1.5
CSMD3-205ENST00000462254 FAM170BA6NMN3 283 aa5.69□□□□□ -1.5
CSMD3-205ENST00000462254 WDR64B1ANS9 1081 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms