RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 BRDTQ58F21 947 aaPredicted RBP26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 DAGLBQ8NCG7 672 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 GJB4Q9NTQ9 266 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 CTAGE5O15320 804 aa26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 ASGR1P07306 291 aa26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 TGFB3P10600 412 aa26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 ZNF76P36508 570 aa26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 CCSAPQ6IQ19 270 aaPredicted RBP26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 DHX37Q8IY37 1157 aaKnown RBP26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 GPRASP2Q96D09 838 aa26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 CDHR1Q96JP9 859 aa26.07■■□□□ 1.76
CCDC28B-203ENST00000461819 A0A1W2PQ45 241 aaPredicted RBP26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 A0A1W2PQY0 241 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 SPATA31C2B4DYI2 1134 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 UBA1P22314 1058 aaKnown RBP26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 ICAM3P32942 547 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 ARHGAP1Q07960 439 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 MTMR1Q13613 665 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 FAM184AQ8NB25 1140 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 UBIAD1Q9Y5Z9 338 aa26.06■■□□□ 1.76
CCDC28B-203ENST00000461819 SORBS3O60504 671 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 GGPS1O95749 300 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 ITGB5P18084 799 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 ATN1P54259 1190 aaPredicted RBP26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 NPY5RQ15761 445 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 DPF3Q92784 378 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 GLT1D1Q96MS3 346 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 BRMS1Q9HCU9 246 aa26.05■■□□□ 1.76
CCDC28B-203ENST00000461819 DNAH12Q6ZR08 3092 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 SEMA3FQ13275 785 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 LAMC2Q13753 1193 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 AFG1LQ8WV93 481 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 VTI1AQ96AJ9 217 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 MXRA8Q9BRK3 442 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 JADE2Q9NQC1 790 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 STARD7Q9NQZ5 370 aa26.04■■□□□ 1.76
CCDC28B-203ENST00000461819 MYL3P08590 195 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 SP2Q02086 613 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 NEDD9Q14511 834 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 CEP55Q53EZ4 464 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 CELF3Q5SZQ8 465 aaKnown RBP26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 KRT25Q7Z3Z0 450 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 EMID1Q96A84 441 aaPredicted RBP26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 MLXIPQ9HAP2 919 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 POLR3EQ9NVU0 708 aa26.03■■□□□ 1.76
CCDC28B-203ENST00000461819 CCDC194A0A1B0GVG4 234 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 A6NJR5 290 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 M0R2N6 131 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 CYP3A4P08684 503 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 KRT2P35908 639 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 CXCL17Q6UXB2 119 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 CRYGNQ8WXF5 182 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 C8orf76Q96K31 380 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 PKD2L1Q9P0L9 805 aa26.02■■□□□ 1.76
CCDC28B-203ENST00000461819 MMP1P03956 469 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 MMP3P08254 477 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 NONOQ15233 471 aaKnown RBP eCLIP26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 LRRC26Q2I0M4 334 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 MYSM1Q5VVJ2 828 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 KRT40Q6A162 431 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 SLC39A5Q6ZMH5 540 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 GIMAP8Q8ND71 665 aaPredicted RBP26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 PPTC7Q8NI37 304 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 CYP2W1Q8TAV3 490 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 OXER1Q8TDS5 423 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 TBCKQ8TEA7 893 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 SPATA33Q96N06 139 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 SENP7Q9BQF6 1050 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 KIF3AQ9Y496 699 aa26.01■■□□□ 1.75
CCDC28B-203ENST00000461819 MAFGO15525 162 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 EVI5O60447 810 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 KPNA6O60684 536 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 CABYRO75952 493 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 GUCY1B3Q02153 619 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 CYFIP1Q7L576 1253 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 NIPA1Q7RTP0 329 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 KCNH7Q9NS40 1196 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 PDE4DIPQ5VU43 2346 aa26■■□□□ 1.75
CCDC28B-203ENST00000461819 ELP1O95163 1332 aa25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 FAM86B1E9PN63 330 aa25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 NOP56O00567 594 aaKnown RBP25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 FAM86B2P0C5J1 330 aa25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 PURAQ00577 322 aaKnown RBP25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 SAFBQ15424 915 aaKnown RBP eCLIP25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 DGKDQ16760 1214 aa25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 METTL7BQ6UX53 244 aa25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 PLA2G4DQ86XP0 818 aa25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.99■■□□□ 1.75
CCDC28B-203ENST00000461819 MEIS1O00470 390 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 KCNA2P16389 499 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 USP11P51784 963 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 RTP1P59025 263 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 SETQ01105 290 aaPredicted RBP25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 SP4Q02446 784 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 HSDL1Q3SXM5 330 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 DIS3L2Q8IYB7 885 aaKnown RBP25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 C7orf61Q8IZ16 206 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 MTG1Q9BT17 334 aaPredicted RBP25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 BCAS3Q9H6U6 928 aa25.98■■□□□ 1.75
CCDC28B-203ENST00000461819 ATP11BQ9Y2G3 1177 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms