RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 DTHD1Q6ZMT9 781 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 RBM43Q6ZSC3 357 aaKnown RBP10.12□□□□□ -0.79
VPS50-207ENST00000458530 ANKRD23Q86SG2 305 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 ELOA2Q8IYF1 753 aaPredicted RBP10.12□□□□□ -0.79
VPS50-207ENST00000458530 AK8Q96MA6 479 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 GOLPH3LQ9H4A5 285 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 GRPEL1Q9HAV7 217 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 BIN2Q9UBW5 565 aaPredicted RBP10.12□□□□□ -0.79
VPS50-207ENST00000458530 KCNH3Q9ULD8 1083 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 KCNH4Q9UQ05 1017 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 HPSEQ9Y251 543 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 RABGAP1Q9Y3P9 1069 aa10.12□□□□□ -0.79
VPS50-207ENST00000458530 SMCHD1A6NHR9 2005 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 A0A0G2JMZ2 1700 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 FARP2O94887 1054 aaPredicted RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 SGPL1O95470 568 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 BCRP11274 1271 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 VCAM1P19320 739 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 USP11P51784 963 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 PPATQ06203 517 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 SNW1Q13573 536 aaKnown RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 PPP4R3AQ6IN85 833 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 SHC4Q6S5L8 630 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 MCF2L2Q86YR7 1114 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 ZKSCAN4Q969J2 545 aaPredicted RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 DDX27Q96GQ7 796 aaKnown RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 ANO3Q9BYT9 981 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 MAF1Q9H063 256 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 RPAP3Q9H6T3 665 aaPredicted RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 MAP3K20Q9NYL2 800 aaKnown RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.11□□□□□ -0.79
VPS50-207ENST00000458530 CCPG1Q9ULG6 757 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 PPP1R9AQ9ULJ8 1098 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 STXBP5LQ9Y2K9 1186 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 ZHX2Q9Y6X8 837 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 TTC28Q96AY4 2481 aa10.11□□□□□ -0.79
VPS50-207ENST00000458530 SPTBN5Q9NRC6 3674 aaKnown RBP10.1□□□□□ -0.79
VPS50-207ENST00000458530 ALPK3Q96L96 1907 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 VWA3AA6NCI4 1184 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 GCOM1H8Y6P7 765 aaPredicted RBP10.1□□□□□ -0.79
VPS50-207ENST00000458530 MARCH6O60337 910 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 POLR2MP0CAP2 368 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 HOXD10P28358 340 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 OAZ1P54368 228 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CAMK4Q16566 473 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CALCRLQ16602 461 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 STX1AQ16623 288 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 UBE2SQ16763 222 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 LRIT3Q3SXY7 679 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 SH3D19Q5HYK7 790 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 KIAA1755Q5JYT7 1200 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CCDC174Q6PII3 467 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CEP57L1Q8IYX8 460 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CNNM3Q8NE01 707 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 RASSF8Q8NHQ8 419 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CLIC6Q96NY7 704 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 NAT10Q9H0A0 1025 aaKnown RBP10.1□□□□□ -0.79
VPS50-207ENST00000458530 RNF208Q9H0X6 261 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CSRNP2Q9H175 543 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 UNC93B1Q9H1C4 597 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 PAK6Q9NQU5 681 aaPredicted RBP10.1□□□□□ -0.79
VPS50-207ENST00000458530 ANO10Q9NW15 660 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CCDC39Q9UFE4 941 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 CPA4Q9UI42 421 aa10.1□□□□□ -0.79
VPS50-207ENST00000458530 USP17L15C9J2P7 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L13C9JLJ4 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L11C9JVI0 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L18D6R9N7 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L22D6RA61 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L17D6RBQ6 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L19D6RCP7 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L20D6RJB6 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 SLC26A4O43511 780 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 SREBF1P36956 1147 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 HMGCS2P54868 508 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 PRKCZQ05513 592 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 TYRO3Q06418 890 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 USP17L24Q0WX57 530 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 PABPC4Q13310 644 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS50-207ENST00000458530 UVSSAQ2YD98 709 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 TKFCQ3LXA3 575 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 KRBA2Q6ZNG9 492 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 CCDC84Q86UT8 332 aaPredicted RBP10.09□□□□□ -0.79
VPS50-207ENST00000458530 SLFN12Q8IYM2 578 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 IQUBQ8NA54 791 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 PROCA1Q8NCQ7 364 aaPredicted RBP10.09□□□□□ -0.79
VPS50-207ENST00000458530 RAET1EQ8TD07 263 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 PXYLP1Q8TE99 480 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 SYMPKQ92797 1274 aaKnown RBP10.09□□□□□ -0.79
VPS50-207ENST00000458530 CUEDC2Q9H467 287 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 MAGEF1Q9HAY2 307 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 SLC38A10Q9HBR0 1119 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 EMILIN3Q9NT22 766 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 TMEM260Q9NX78 707 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 MTMR10Q9NXD2 777 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 DDX25Q9UHL0 483 aaKnown RBP10.09□□□□□ -0.79
VPS50-207ENST00000458530 AFG3L2Q9Y4W6 797 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 VCANP13611 3396 aa10.09□□□□□ -0.79
VPS50-207ENST00000458530 PDHXO00330 501 aa10.08□□□□□ -0.8
VPS50-207ENST00000458530 CXCL11O14625 94 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms