RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PCNX4Q63HM2 1172 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 NLRX1Q86UT6 975 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 FAM126BQ8IXS8 530 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 TOX2Q96NM4 488 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 ALG1Q9BT22 464 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 ITGB8P26012 769 aa21.4■■□□□ 1.02
USP39-209ENST00000458268 CELF3Q5SZQ8 465 aaKnown RBP21.4■■□□□ 1.02
USP39-209ENST00000458268 CPLX2Q6PUV4 134 aaKnown RBP21.4■■□□□ 1.02
USP39-209ENST00000458268 TRIM22Q8IYM9 498 aa21.4■■□□□ 1.02
USP39-209ENST00000458268 ANO3Q9BYT9 981 aa21.4■■□□□ 1.02
USP39-209ENST00000458268 SLKQ9H2G2 1235 aaPredicted RBP21.4■■□□□ 1.02
USP39-209ENST00000458268 BCAS3Q9H6U6 928 aa21.4■■□□□ 1.02
USP39-209ENST00000458268 VPS54Q9P1Q0 977 aa21.4■■□□□ 1.02
USP39-209ENST00000458268 NOP56O00567 594 aaKnown RBP21.39■■□□□ 1.01
USP39-209ENST00000458268 FIBPO43427 364 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 KPNA6O60684 536 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 STAM2O75886 525 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 IFNAR1P17181 557 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 AK2P54819 239 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 NTRK3Q16288 839 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 PKN1Q16512 942 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 DGKDQ16760 1214 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 CYFIP1Q7L576 1253 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 CCDC12Q8WUD4 166 aaPredicted RBP21.39■■□□□ 1.01
USP39-209ENST00000458268 ZNF274Q96GC6 653 aaPredicted RBP21.39■■□□□ 1.01
USP39-209ENST00000458268 INPP4AQ96PE3 977 aaPredicted RBP21.39■■□□□ 1.01
USP39-209ENST00000458268 RNF26Q9BY78 433 aaPredicted RBP21.39■■□□□ 1.01
USP39-209ENST00000458268 PRO3102Q9H379 93 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 C6orf50Q9HD87 102 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 TRMT13Q9NUP7 481 aaKnown RBP21.39■■□□□ 1.01
USP39-209ENST00000458268 SCN10AQ9Y5Y9 1956 aa21.39■■□□□ 1.01
USP39-209ENST00000458268 KIAA0355O15063 1070 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 B4GALT4O60513 344 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 ZNF76P36508 570 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 NEK4P51957 841 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 EVCP57679 992 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 HSDL1Q3SXM5 330 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 MYSM1Q5VVJ2 828 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 TDHQ8IZJ6 230 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 ALDH8A1Q9H2A2 487 aaPredicted RBP21.38■■□□□ 1.01
USP39-209ENST00000458268 NOD1Q9Y239 953 aa21.38■■□□□ 1.01
USP39-209ENST00000458268 SPATA31C2B4DYI2 1134 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 BMP8BP34820 402 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 FPGSQ05932 587 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 SEMA3FQ13275 785 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 C8orf34Q49A92 452 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 XRRA1Q6P2D8 792 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 SLC43A3Q8NBI5 491 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 PPTC7Q8NI37 304 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 RASGRP4Q8TDF6 673 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 TBX21Q9UL17 535 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 TPCN1Q9ULQ1 816 aa21.37■■□□□ 1.01
USP39-209ENST00000458268 TGFB3P10600 412 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 CYP2C9P11712 490 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 CYP2C18P33260 490 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 PSEN2P49810 448 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 NLRP5P59047 1200 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 SCRN1Q12765 414 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 MTMR1Q13613 665 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 NEDD9Q14511 834 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 ANKRD1Q15327 319 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 UTP14CQ5TAP6 766 aaKnown RBP21.36■■□□□ 1.01
USP39-209ENST00000458268 REXO1Q8N1G1 1221 aaKnown RBP21.36■■□□□ 1.01
USP39-209ENST00000458268 CCDC148Q8NFR7 591 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 UIMC1Q96RL1 719 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 GLT8D2Q9H1C3 349 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 HIPK3Q9H422 1215 aa21.36■■□□□ 1.01
USP39-209ENST00000458268 UMODL1Q5DID0 1318 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 ADAMTS3O15072 1205 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 TIMP1P01033 207 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 FOSP01100 380 aaPredicted RBP21.35■■□□□ 1.01
USP39-209ENST00000458268 CD4P01730 458 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 ICAM3P32942 547 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 FXR1P51114 621 aaKnown RBP eCLIP21.35■■□□□ 1.01
USP39-209ENST00000458268 CCL23P55773 120 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 AP3B2Q13367 1082 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 MFSD10Q14728 455 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 NECAB1Q8N987 351 aa21.35■■□□□ 1.01
USP39-209ENST00000458268 EMID1Q96A84 441 aaPredicted RBP21.35■■□□□ 1.01
USP39-209ENST00000458268 ITGB5P18084 799 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 GNA11P29992 359 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 KIAA0753Q2KHM9 967 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 C9orf50Q5SZB4 431 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 C7orf31Q8N865 590 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 KAT2BQ92831 832 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 GPRASP2Q96D09 838 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 AIFM3Q96NN9 605 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 TELO2Q9Y4R8 837 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 UBIAD1Q9Y5Z9 338 aa21.34■■□□□ 1.01
USP39-209ENST00000458268 A0A1W2PPC1 479 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 CDKL5O76039 1030 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 DEXIO95424 95 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 LARGE1O95461 756 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 SHHQ15465 462 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 METTL7BQ6UX53 244 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 TMEM199Q8N511 208 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 CYP2W1Q8TAV3 490 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 LRCH3Q96II8 777 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 CDHR1Q96JP9 859 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 KATNAL1Q9BW62 490 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms