RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 TRPC5Q9UL62 973 aaPredicted RBP12.14□□□□□ -0.47
RFX3-211ENST00000458034 MPHOSPH10O00566 681 aaKnown RBP12.13□□□□□ -0.47
RFX3-211ENST00000458034 ONECUT3O60422 494 aaPredicted RBP12.13□□□□□ -0.47
RFX3-211ENST00000458034 NPR1P16066 1061 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 ALDH1B1P30837 517 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 USP14P54578 494 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 AP3B2Q13367 1082 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 HSP90B2PQ58FF3 399 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 DYMQ7RTS9 669 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 SLC51AQ86UW1 340 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 SLFN12Q8IYM2 578 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 CCDC155Q8N6L0 562 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 DDX12PQ92771 950 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 MTMR8Q96EF0 704 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 KIF12Q96FN5 646 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 PURBQ96QR8 312 aaKnown RBP12.13□□□□□ -0.47
RFX3-211ENST00000458034 PNKPQ96T60 521 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 TRIM34Q9BYJ4 488 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 PSTPIP2Q9H939 334 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 AGPAT5Q9NUQ2 364 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 PSD3Q9NYI0 1048 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.13□□□□□ -0.47
RFX3-211ENST00000458034 PLAGL2Q9UPG8 496 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 SIK3Q9Y2K2 1263 aa12.13□□□□□ -0.47
RFX3-211ENST00000458034 RASSF10A6NK89 507 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 RIMBP2O15034 1052 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 LCA5LO95447 670 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 ATP1A1P05023 1023 aaKnown RBP12.12□□□□□ -0.47
RFX3-211ENST00000458034 SHMT1P34896 483 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 USP11P51784 963 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 FKBP1AP62942 108 aaKnown RBP12.12□□□□□ -0.47
RFX3-211ENST00000458034 FKBP3Q00688 224 aaKnown RBP12.12□□□□□ -0.47
RFX3-211ENST00000458034 DDR1Q08345 913 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 EHHADHQ08426 723 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 COASYQ13057 564 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 CCDC40Q4G0X9 1142 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 FAM26FQ5R3K3 315 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 HAUS3Q68CZ6 603 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 NCAPH2Q6IBW4 605 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 CACNA2D4Q7Z3S7 1137 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 SEPT12Q8IYM1 358 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 ERMNQ8TAM6 284 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 EXOC4Q96A65 974 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 DHX36Q9H2U1 1008 aaKnown RBP12.12□□□□□ -0.47
RFX3-211ENST00000458034 MMRN2Q9H8L6 949 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 VIPAS39Q9H9C1 493 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 ABCB6Q9NP58 842 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 PANK4Q9NVE7 773 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 TRIM10Q9UDY6 481 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 TSKSQ9UJT2 592 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 PCDHA12Q9UN75 941 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 L1RE1Q9UN81 338 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 JRKLQ9Y4A0 524 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 COL4A3BPQ9Y5P4 624 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 ADAMTSL1Q8N6G6 1762 aa12.12□□□□□ -0.47
RFX3-211ENST00000458034 SSU72P8A0A1W2PR75 194 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 F8W031 263 aaPredicted RBP12.11□□□□□ -0.47
RFX3-211ENST00000458034 AKR1B10O60218 316 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 ABL1P00519 1130 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 PRLRP16471 622 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 KLK7P49862 253 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 KIF11P52732 1056 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 EIF6P56537 245 aaKnown RBP12.11□□□□□ -0.47
RFX3-211ENST00000458034 VSNL1P62760 191 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 ATP2B2Q01814 1243 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 UBE2SQ16763 222 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 PDXDC1Q6P996 788 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 C2CD5Q86YS7 1000 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 FAM71BQ8TC56 605 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 SYN2Q92777 582 aaPredicted RBP12.11□□□□□ -0.47
RFX3-211ENST00000458034 MRIQ9BWK5 157 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 IFIH1Q9BYX4 1025 aaKnown RBP12.11□□□□□ -0.47
RFX3-211ENST00000458034 TANGO6Q9C0B7 1094 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 SH2D4AQ9H788 454 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 MED4Q9NPJ6 270 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 DDX4Q9NQI0 724 aaKnown RBP12.11□□□□□ -0.47
RFX3-211ENST00000458034 NYAP2Q9P242 653 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 FAM184BQ9ULE4 1060 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 TRPC6Q9Y210 931 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 PCDHA13Q9Y5I0 950 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 SIPA1L1O43166 1804 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 AFF2P51816 1311 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 PITPNM2Q9BZ72 1349 aa12.11□□□□□ -0.47
RFX3-211ENST00000458034 CYP3A7-CYP3A51PA0A087WV96 503 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 USP17L10C9JJH3 530 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 TBX3O15119 743 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 PJA2O43164 708 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 KRT18P05783 430 aaKnown RBP12.1□□□□□ -0.47
RFX3-211ENST00000458034 TCP1P17987 556 aaKnown RBP12.1□□□□□ -0.47
RFX3-211ENST00000458034 CYP3A7P24462 503 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 PDE6BP35913 854 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 MAGEA1P43355 309 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 HDLBPQ00341 1268 aaKnown RBP12.1□□□□□ -0.47
RFX3-211ENST00000458034 ITIH3Q06033 890 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 TRAF1Q13077 416 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 CASP8Q14790 479 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 CDC42EP5Q6NZY7 148 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 LRRC55Q6ZSA7 311 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 TEX2Q8IWB9 1127 aa12.1□□□□□ -0.47
RFX3-211ENST00000458034 NOA1Q8NC60 698 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms