RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TMEM191BP0C7N4 346 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 PRELPP51888 382 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 JAK3P52333 1124 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 FKBP3Q00688 224 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 DYDC1Q8WWB3 177 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 MRFAP1L1Q96HT8 127 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 C1orf112Q9NSG2 853 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 C19orf81C9J6K1 198 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 IKBKBO14920 756 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 CLIC2O15247 247 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 POLR2FP61218 127 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 YWHAEP62258 255 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 CXCL9Q07325 125 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 ORC2Q13416 577 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 GOLGA1Q92805 767 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 SECISBP2LQ93073 1101 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 TBC1D22BQ9NU19 505 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 CWC15Q9P013 229 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 ZDHHC9Q9Y397 364 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 CHD2O14647 1828 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 MYZAPP0CAP1 466 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 HOXA10P31260 410 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 SNX16P57768 344 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 PSMD2Q13200 908 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 SEL1L2Q5TEA6 688 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 MAATS1Q7Z4T9 603 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 TSPYL1Q9H0U9 437 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 PODXL2Q9NZ53 605 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 V9GYY5 206 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 PSMC2P35998 433 aaKnown RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 RASSF7Q02833 373 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 ADGRA1Q86SQ6 560 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 RSPH3Q86UC2 560 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 PPM1KQ8N3J5 372 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 NAPGQ99747 312 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-213ENST00000448038 TMEM206Q9H813 350 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 BCL2L12Q9HB09 334 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 MTUS1Q9ULD2 1270 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 LTN1O94822 1766 aa8.14□□□□□ -1.11
SYNE1-213ENST00000448038 PALM3A6NDB9 673 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 USP11P51784 963 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 EXOC3L4Q17RC7 722 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 Q3C1V9 767 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 C17orf53Q8N3J3 647 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 PRR12Q9ULL5 1215 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 SPDYE2BA6NHP3 402 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 WDR64B1ANS9 1081 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 ZEB2O60315 1214 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 SPDYE6P0CI01 402 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 FCER1AP12319 257 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 EEF1GP26641 437 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 DDIT3P35638 169 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 C9orf131Q5VYM1 1079 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 DCUN1D2Q6PH85 259 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 FAM186BQ8IYM0 893 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 BANK1Q8NDB2 785 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 MMP19Q99542 508 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 IFIH1Q9BYX4 1025 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 NBPF3Q9H094 633 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 CCNE1P24864 410 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 GIMAP8Q8ND71 665 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 PHF20Q9BVI0 1012 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 PCIF1Q9H4Z3 704 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 SFI1A8K8P3 1242 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 CTNND1O60716 968 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 KRT76Q01546 638 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 CUL4BQ13620 913 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 DDX12PQ92771 950 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 MMS19Q96T76 1030 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 APOL6Q9BWW8 343 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 MAK16Q9BXY0 300 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 RWDD2AQ9UIY3 292 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 PHLPP1O60346 1717 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 FAM170AA1A519 330 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 H0YHG0 523 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 IPO5O00410 1097 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 PPP2R3AQ06190 1150 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 SPOUT1Q5T280 376 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 ENOX1Q8TC92 643 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 U2AF1L4Q8WU68 220 aaKnown RBP8.13□□□□□ -1.11
SYNE1-213ENST00000448038 GOLPH3LQ9H4A5 285 aa8.13□□□□□ -1.11
SYNE1-213ENST00000448038 PDS5AQ29RF7 1337 aaKnown RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 TNNC1P63316 161 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 MYL7Q01449 175 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 VGLL2Q8N8G2 317 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 DYDC2Q96IM9 177 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 TEX13BQ9BXU2 312 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 MYO1AQ9UBC5 1043 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 SALL1Q9NSC2 1324 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 DISP2A7MBM2 1401 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 TCRBV5S4A2TA0A5A2 114 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 POTEB3A0JP26 581 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 POTECB2RU33 542 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 ATP2C1P98194 919 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 POTEBQ6S5H4 581 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 NLRP7Q8WX94 980 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 MAP3K14Q99558 947 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 ARFGAP3Q9NP61 516 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms