RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 FAM83BQ5T0W9 1011 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 PEX26Q7Z412 305 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 RDH13Q8NBN7 331 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 U2AF1L4Q8WU68 220 aaKnown RBP13.07□□□□□ -0.32
MSH6-204ENST00000445503 CUL5Q93034 780 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 SH2D4AQ9H788 454 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 EPHB6O15197 1021 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 NR2F2P24468 414 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 SNAP25P60880 206 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 CLEC4GQ6UXB4 293 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 TCEAL9Q9UHQ7 104 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 FAM169AQ9Y6X4 670 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 SYCP3Q8IZU3 236 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 ERMNQ8TAM6 284 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 UHMK1Q8TAS1 419 aaKnown RBP13.06□□□□□ -0.32
MSH6-204ENST00000445503 CDCA7Q9BWT1 371 aaPredicted RBP13.06□□□□□ -0.32
MSH6-204ENST00000445503 TARSL2A2RTX5 802 aaKnown RBP13.06□□□□□ -0.32
MSH6-204ENST00000445503 KLRC4O43908 158 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 RASA1P20936 1047 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 CARSP49589 748 aaKnown RBP13.06□□□□□ -0.32
MSH6-204ENST00000445503 IRAK1P51617 712 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 TRAPPC3LQ5T215 181 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 MAEAQ7L5Y9 396 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 STK17AQ9UEE5 414 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 ARMCX3Q9UH62 379 aaPredicted RBP13.06□□□□□ -0.32
MSH6-204ENST00000445503 ZSCAN5CA6NGD5 496 aaPredicted RBP13.06□□□□□ -0.32
MSH6-204ENST00000445503 CLIC2O15247 247 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 GCNT3O95395 438 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 NFIXQ14938 502 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 SBK1Q52WX2 424 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 GLIS3Q8NEA6 775 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 ARL8AQ96BM9 186 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 C7orf25Q9BPX7 421 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 SELENOSQ9BQE4 189 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 LAMA4Q16363 1823 aa13.06□□□□□ -0.32
MSH6-204ENST00000445503 BCL9O00512 1426 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 SPDYE3A6NKU9 549 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L15C9J2P7 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L13C9JLJ4 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L11C9JVI0 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L18D6R9N7 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L22D6RA61 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L17D6RBQ6 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L19D6RCP7 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L20D6RJB6 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 KRIT1O00522 736 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 CTNNA1P35221 906 aaKnown RBP13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L24Q0WX57 530 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 USP17L6PQ6QN14 398 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 DAAM2Q86T65 1068 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 KIAA0895Q8NCT3 520 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 ZNF507Q8TCN5 953 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 ZNF384Q8TF68 577 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 VIPAS39Q9H9C1 493 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 TSKSQ9UJT2 592 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 N4BP2Q86UW6 1770 aaPredicted RBP13.05□□□□□ -0.32
MSH6-204ENST00000445503 TTBK2Q6IQ55 1244 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 B4GALNT4Q76KP1 1039 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 CPLX4Q7Z7G2 160 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 CCDC114Q96M63 670 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 GCOM1H8Y6P7 765 aaPredicted RBP13.05□□□□□ -0.32
MSH6-204ENST00000445503 SLC37A4O43826 429 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 SYF2O95926 243 aaKnown RBP13.05□□□□□ -0.32
MSH6-204ENST00000445503 MYZAPP0CAP1 466 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 STAT3P40763 770 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 COASYQ13057 564 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 LLGL1Q15334 1064 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 LINC00116Q8NCU8 138 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 RAD54LQ92698 747 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 ZC3H12CQ9C0D7 883 aaKnown RBP13.05□□□□□ -0.32
MSH6-204ENST00000445503 EMILIN3Q9NT22 766 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 PKD2L1Q9P0L9 805 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 PLAGL2Q9UPG8 496 aa13.05□□□□□ -0.32
MSH6-204ENST00000445503 SCN11AQ9UI33 1791 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 POTEB3A0JP26 581 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 POTECB2RU33 542 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 GUCY1A3Q02108 690 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 LRRC63Q05C16 580 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 GRIK5Q16478 980 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 ARHGAP44Q17R89 818 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 KRT71Q3SY84 523 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 POTEBQ6S5H4 581 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 CCDC121Q6ZUS5 278 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 IQCDQ96DY2 449 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 FAM196BA6NMK8 535 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 SFI1A8K8P3 1242 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 FAM13AO94988 1023 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 SERPING1P05155 500 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 PLA2G4BP0C869 781 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 PRPHP41219 470 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 IFT88Q13099 833 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 PDXDC1Q6P996 788 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 EMBQ6PCB8 327 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 EFCAB13Q8IY85 973 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 GUF1Q8N442 669 aaKnown RBP13.04□□□□□ -0.32
MSH6-204ENST00000445503 NUDT12Q9BQG2 462 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 RIC8AQ9NPQ8 531 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 USP40Q9NVE5 1235 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 DNM3Q9UQ16 869 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 A0A087WUV0 522 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms