RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 CNPY4Q8N129 248 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 MDM1Q8TC05 714 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 LARP4BQ92615 738 aaKnown RBP9.94□□□□□ -0.82
COPB1-202ENST00000439561 SAMD15Q9P1V8 674 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 AMACRQ9UHK6 382 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 STK38LQ9Y2H1 464 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 UTP11Q9Y3A2 253 aaKnown RBP9.94□□□□□ -0.82
COPB1-202ENST00000439561 DAPK3O43293 454 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 FAM107AO95990 144 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 PRDX5P30044 214 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 PPP1R2P41236 205 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 KDM7AQ6ZMT4 941 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 TBC1D1Q86TI0 1168 aaPredicted RBP9.94□□□□□ -0.82
COPB1-202ENST00000439561 PARP9Q8IXQ6 854 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 SH3GL2Q99962 352 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 SEMA6BQ9H3T3 888 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 PCDHA6Q9UN73 950 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 PCDHA8Q9Y5H6 950 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 MYCNP04198 464 aaPredicted RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 GLE1Q53GS7 698 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 PDXDC1Q6P996 788 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 USP17L2Q6R6M4 530 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 KRT25Q7Z3Z0 450 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 MAPKAPK5Q8IW41 473 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 REXO1Q8N1G1 1221 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 PRPF38AQ8NAV1 312 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 CCDC26Q8TAB7 109 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 GJA10Q969M2 543 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 RSRC1Q96IZ7 334 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 ERGIC2Q96RQ1 377 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 TAF1DQ9H5J8 278 aaPredicted RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 TMEM260Q9NX78 707 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 KLRC4O43908 158 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 MECOMQ03112 1051 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 FUT2Q10981 343 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 IFI16Q16666 785 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 SWT1Q5T5J6 900 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 TGFBRAP1Q8WUH2 860 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 ZKSCAN4Q969J2 545 aaPredicted RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 FRMPD2Q68DX3 1309 aaPredicted RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 ZC3H4Q9UPT8 1303 aaKnown RBP9.93□□□□□ -0.82
COPB1-202ENST00000439561 MYH15Q9Y2K3 1946 aa9.93□□□□□ -0.82
COPB1-202ENST00000439561 HSD17B3P37058 310 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 SKOR1P84550 965 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 MIIPQ5JXC2 388 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 U2AF1L4Q8WU68 220 aaKnown RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 DDX12PQ92771 950 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 CAVIN3Q969G5 261 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 HVCN1Q96D96 273 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 GPCPD1Q9NPB8 672 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 DCP1AQ9NPI6 582 aaPredicted RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 KBTBD4Q9NVX7 518 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 N4BP2Q86UW6 1770 aaPredicted RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 A0A087X0T9 212 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 MYMKA6NI61 221 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 SERPING1P05155 500 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 MYL1P05976 194 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 FAM228BP0C875 321 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 FGFR2P21802 821 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 NPY5RQ15761 445 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 FAM26FQ5R3K3 315 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 CYB5D1Q6P9G0 228 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 CCDC63Q8NA47 563 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 KIAA0895Q8NCT3 520 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 GLIS3Q8NEA6 775 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 MICAL1Q8TDZ2 1067 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 THOC1Q96FV9 657 aaKnown RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 SEC16BQ96JE7 1060 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 MTA3Q9BTC8 594 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 CELF4Q9BZC1 486 aaKnown RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 CCSER1Q9C0I3 900 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 VCPKMTQ9H867 229 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 ANKIB1Q9P2G1 1089 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 COL4A3BPQ9Y5P4 624 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 ARHGAP23Q9P227 1491 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 SPATA31A3Q5VYP0 1347 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 SART1O43290 800 aaKnown RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 SKAP2O75563 359 aaPredicted RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 PPP2R2AP63151 447 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 FKBP3Q00688 224 aaKnown RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 MYO1EQ12965 1108 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 TEX2Q8IWB9 1127 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 TNFRSF25Q93038 417 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 COA7Q96BR5 231 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 ELAC2Q9BQ52 826 aaKnown RBP9.92□□□□□ -0.82
COPB1-202ENST00000439561 RNF14Q9UBS8 474 aa9.92□□□□□ -0.82
COPB1-202ENST00000439561 RASSF10A6NK89 507 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 PGRMC1O00264 195 aaKnown RBP9.91□□□□□ -0.82
COPB1-202ENST00000439561 OPLAHO14841 1288 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 ACTN1P12814 892 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 PLTPP55058 493 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 IKQ13123 557 aaPredicted RBP9.91□□□□□ -0.82
COPB1-202ENST00000439561 ADAM9Q13443 819 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 MARCH10Q8NA82 808 aaPredicted RBP9.91□□□□□ -0.82
COPB1-202ENST00000439561 CCDC197Q8NCU1 140 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 PAIP2Q9BPZ3 127 aaKnown RBP9.91□□□□□ -0.82
COPB1-202ENST00000439561 CUEDC2Q9H467 287 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 ACTR5Q9H9F9 607 aaPredicted RBP9.91□□□□□ -0.82
COPB1-202ENST00000439561 KCNK9Q9NPC2 374 aa9.91□□□□□ -0.82
COPB1-202ENST00000439561 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.91□□□□□ -0.824e-6■■■■■ 49.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms